Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01573 ATGGTGAGGTCGTCAAGTTGTGAAAAAAACAGTGTCGTCAAAAGCAGTGTATGGATCGCAGACGAAGACGCAAAGACACCTACGTTTGTATCGGAACATGGTTCTGGTAATTGGACTTCTGTCCCTAAAAAAACAGGTGTTAAGAGGTGTGGAAAAAGTTGCAGACTTAGGTTGAGTAGCTACGTACCTGATCTTAAGCATGATAACTTTACATCGGAAGAAGAAGATTTAATCGTTAAGCTTCACGCAGCCATCGGTAGTAGGTGGTCTATAATAGCTCAACAACTACCTGGAAGAACAGACAATGATGTAAAGAACAATTGGAACACAAAGCTGAAAAAGAAGCTTTCTCAAATGGGGATAGATCCTGTTACTCACAAACCATTCTCTAAACTCATTGCTGATTATGGAAATATAGGTGCTACTACTGCTGCTGCTGCTACTAATTCACAACAAAGATTGATCAGAAACACAAACGACCGATCAATGCAATTGCGAACGAAAATGGAAACAACGATGTTTGAGGAAGGATGTTTGTCATCAACACTATCTACCTCATCTGCTTGTTCTTCAACTTCAACACACGGAACAACATTTTTTGCACCATTTAGTTGGAATGATTTTCTTATAGAAGATGCTAATTTTGCAGTACCTACTAATAATAACCTGCAagaagaacaatatttagagaaaaagaaagaggttatgtcatcatcatcatcctcagatGTTTCATTTGTTGAAGCCATACTTGGTCAAGAAAATGAGATGTTTCTAAGCTTTCCGGAACTTTTGGAGGAACCATCCAATTACTGA 816 0.3615 MVRSSSCEKNSVVKSSVWIADEDAKTPTFVSEHGSGNWTSVPKKTGVKRCGKSCRLRLSSYVPDLKHDNFTSEEEDLIVKLHAAIGSRWSIIAQQLPGRTDNDVKNNWNTKLKKKLSQMGIDPVTHKPFSKLIADYGNIGATTAAAATNSQQRLIRNTNDRSMQLRTKMETTMFEEGCLSSTLSTSSACSSTSTHGTTFFAPFSWNDFLIEDANFAVPTNNNLQEEQYLEKKKEVMSSSSSSDVSFVEAILGQENEMFLSFPELLEEPSNY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01573 271 CDD SANT 18 57 IPR001005 -
Tsu03g01573 271 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu03g01573 271 CDD SANT 69 112 IPR001005 -
Tsu03g01573 271 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Tsu03g01573 271 Gene3D - 17 66 - -
Tsu03g01573 271 Gene3D - 68 130 - -
Tsu03g01573 271 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Tsu03g01573 271 Pfam Myb-like DNA-binding domain 18 61 IPR001005 -
Tsu03g01573 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 116 IPR017930 -
Tsu03g01573 271 SMART sant 14 64 IPR001005 -
Tsu03g01573 271 SMART sant 66 114 IPR001005 -
Tsu03g01573 271 SUPERFAMILY Homeodomain-like 15 108 IPR009057 -
Tsu03g01573 271 PANTHER F14D16.11-RELATED 1 271 - -
Tsu03g01573 271 PANTHER F14D16.11-RELATED 1 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01573 Tsu-Chr3 15552782 15553975 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01573 1 267 MYB Transcription Factor Family AT3G28470 42.138 5.59e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g01573 Myb_DNA-binding 2.7e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01573 K09422 - gmx:100795381 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01573 03 15552782 15553975 Tsu03g01573 03 15552782 15553975 ECH