Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01560 ATGGGTTTGAGATGTAGCTGTGTTGTTGTCTTAGTAACTCTAATGCTTCTTCTTCCATTAATGGTTTCTTCAGCTTCTATTGTCAAAAACCTTCCTGGTTTTGATGGGGATCTTCCATTCAAGCTTGAGACTGgATACATAGGAGTGGGAGAAGGAGCAAAGGTGcaaatattttactattttgtgGAGTCTCAAAGAAATCCCTTCATTGATCCAATTTTACTTTGGTTCATTGGTGGTCCCGGATGTTCTGCTCTTACCGcattcttttttgaaaatgGGCCTGTAATAATTGATCGCAATTACACAGGGAACCTTCCAAAGCTGAAATTGAATCCATATGGTTGGACACATATGTTGAATATGATATACATAGATATGCCAGTAGGGACTGGATTTTCTTACTCAGAAACTCAAGAAGGTTACTATAGTAGTGACACACTTTGGGTGGAACATTCATATACTTTTTTacaaaagTGGTTTATTGATCATTCAGAGTTTAGCTCAAATCCCTTTTATATTGGCGCCGGCTCATATTCAGGAAAACCTACTGGTCCTCTTGTTAAAAAAGTATATGAAGGATACAAAGCAGGACATGTGCCACACATAAATATCAAAGGTTATGTGCTTGCAAGTGCATTTGTACTAGACAGCGTTCAGAATACAAAAATGCAAGTTTTATTTGCATACCATATGACACTTATACCAAAAGAACTCTATGAGTCTTTGGAAGAAAATTGTAAGGGTGATTATGTAAACATTGATCCAGATAACACAAAGTGTGTCTTAGATTTTCAAGCTTATTCTGAGATAATTCGTTATATAAATGTACAACAAATTTTAGATACTGTATGTATCACTACACCTGCCGTGAACCAAGTAATTCGACAACCGGTTCATGATGATCAAGAATTTCGGTGTAGAGGCTATGATTATATTCTTGTCAACTTATGGGAAAATGACGAAAACGTGCGGAAAGCCCTTTATATAAGAGAGGGAACTAAAGGGGAGTTCTTGAGATGCAACAAGACTGGTTTGGCATACACATACAATCAAACCAATGTTATAGAATATTATCACAATCTCACACAAGCCAACCTCCAAGCTCTCGTTTACAGTGGTGATCATGACCTGGTTATACCACACGTGAGTGCAAATTATTGGATCAAGTCATTCAACATGAGCATACATGATAAATGGCGTGCATGGTTTGTTGAAGATTTACAGAAATCtacaaaatga 1242 0.3583 MGLRCSCVVVLVTLMLLLPLMVSSASIVKNLPGFDGDLPFKLETGYIGVGEGAKVQIFYYFVESQRNPFIDPILLWFIGGPGCSALTAFFFENGPVIIDRNYTGNLPKLKLNPYGWTHMLNMIYIDMPVGTGFSYSETQEGYYSSDTLWVEHSYTFLQKWFIDHSEFSSNPFYIGAGSYSGKPTGPLVKKVYEGYKAGHVPHINIKGYVLASAFVLDSVQNTKMQVLFAYHMTLIPKELYESLEENCKGDYVNIDPDNTKCVLDFQAYSEIIRYINVQQILDTVCITTPAVNQVIRQPVHDDQEFRCRGYDYILVNLWENDENVRKALYIREGTKGEFLRCNKTGLAYTYNQTNVIEYYHNLTQANLQALVYSGDHDLVIPHVSANYWIKSFNMSIHDKWRAWFVEDLQKSTK 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01560 413 SUPERFAMILY alpha/beta-Hydrolases 28 405 IPR029058 -
Tsu03g01560 413 Gene3D - 307 413 - -
Tsu03g01560 413 Gene3D alpha/beta hydrolase 22 295 IPR029058 -
Tsu03g01560 413 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 407 IPR001563 GO:0004185|GO:0006508
Tsu03g01560 413 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Tsu03g01560 413 PRINTS Carboxypeptidase C serine protease (S10) family signature 160 185 IPR001563 GO:0004185|GO:0006508
Tsu03g01560 413 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Tsu03g01560 413 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 10-RELATED 10 407 - -
Tsu03g01560 413 Pfam Serine carboxypeptidase 32 409 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01560 Tsu-Chr3 15448548 15457846 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01560 22 51 Calmodulin-binding Proteins AT2G22960 66.667 2.54e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01560 K16296 - gmx:100791997 436.032