Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01553 ATGGGAATTTGTTGCTCCCAAGGCGGAGATCAACAGGCCGACAACACGGCCGTTGCAGCAGACAAGGGAGAAAACAACCAACAAGAAAACACCAACGATAATAACAACAACGATAATGAGCCATCGACAAACCCTATAACCACGCCACCACCAACATCAAAACCACCGGCCTCAACACCCGCACCTGCTCCAGCTAAACCCACGAAACCGGCTCCCATGGGGCCCGTCTTACAACGACCAATGGAGGACGTTAGAGCGACATATACCATAGGGAAAGAGCTAGGGAGAGGACAATTTGGTGTAACACATTTATGCACACATAAGATAACAAAAGAACAATTTGCATGCAAAACAATTGCTAAAAGAAAACTAGTGAATAAAGAAGATATAGAAGATGTTAGGAGGGAGGTGCAAATAATGTATCACCTAACGGGTCAAGCAAATATTGTGGAACTAAAAGGTGCATATGAAGATAAACAATCTGTTCATTTGGTCATGGAATTATGTGGTGGTGGCGAACTATTTGATCGAATTATTGCGAAGGGACTTTATACCGAACGTGCCGCGGCTGCATTGTTGAGGACGATTGTGCAAATTATTCATACATTACATTCAATGGGTGTTATTCATAGAGATCTTAAGCCTGAAAATTTTCTCTTGTTGAATAAGGATGAAAATGCACCACTTAAGGTCACAGATTTTGGTCTATCCGTCTTTTTCAAAGAagGAGAAATGTTCAAAGACATTGTTGGTAGTGCATATTACATAGCACCAGAGGTGTTGAAGAGGAGATATGGGCAAGAAGTTGACATATGGAGTATTGGTGTCATGTTATACATTCTTCTTTCTGGTGTCCCTCCTTTTTGGGCagAATCCGAACATGGTATATTCAATGCCATATTAAGAGGTCACATTGACTTTACAAGCGATCCATGGCCTTCAATTTCACCTTCAGCAAAAGATCTtgttaggaaaatgttaaattcAGATCCCAAACAAAGACTTACAGCATTTGAAGTTTTGAATCACCCTTGGATCAAGGAGGATGGAGAAGCACCAGATAAACCTATTGACAATGCTGTACTTAATAGGCTCAAGCAGTTTAGAGCAATGAACCAATTTAAGAAAGTTGCTCTAAAGGTAATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAACTCAAACAAGGCCTTGCAAAGCAGGGGACCAAGCTTTCAGAACAAGAAGTTAAGCAACTAATGGAAGCTGCTGATGCTGATGGAAATGGAACGATAGATTACGACGAATTCATCACAGCAACAATGCACATGAACAGATTGAATAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAACAGCGGGTTCATTACCACAGAAGAATTAGACCAAGCTCTACGTGAATACAATATGCATGATGGCAGAGACATCAAGGATATCCTTCAAGAAGTTGATGGAGATAATGATGGACGTATTAACTATGATGAGTTTGCAGCAATGATGAGAAAAGGAAATCCAGAAGCTCATACTAGGAAGAGACGTGATTCATTTGTCACGCAATAG 1635 0.4006 MGICCSQGGDQQADNTAVAADKGENNQQENTNDNNNNDNEPSTNPITTPPPTSKPPASTPAPAPAKPTKPAPMGPVLQRPMEDVRATYTIGKELGRGQFGVTHLCTHKITKEQFACKTIAKRKLVNKEDIEDVRREVQIMYHLTGQANIVELKGAYEDKQSVHLVMELCGGGELFDRIIAKGLYTERAAAALLRTIVQIIHTLHSMGVIHRDLKPENFLLLNKDENAPLKVTDFGLSVFFKEGEMFKDIVGSAYYIAPEVLKRRYGQEVDIWSIGVMLYILLSGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPSAKDLVRKMLNSDPKQRLTAFEVLNHPWIKEDGEAPDKPIDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLSEQEVKQLMEAADADGNGTIDYDEFITATMHMNRLNREEHLYTAFQYFDKDNSGFITTEELDQALREYNMHDGRDIKDILQEVDGDNDGRINYDEFAAMMRKGNPEAHTRKRRDSFVTQ 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01553 544 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01553 544 ProSitePatterns EF-hand calcium-binding domain. 402 414 IPR018247 -
Tsu03g01553 544 Pfam EF-hand domain pair 463 526 IPR002048 GO:0005509
Tsu03g01553 544 Pfam EF-hand domain pair 394 454 IPR002048 GO:0005509
Tsu03g01553 544 SMART efh_1 429 457 IPR002048 GO:0005509
Tsu03g01553 544 SMART efh_1 393 421 IPR002048 GO:0005509
Tsu03g01553 544 SMART efh_1 500 528 IPR002048 GO:0005509
Tsu03g01553 544 SMART efh_1 465 493 IPR002048 GO:0005509
Tsu03g01553 544 MobiDBLite consensus disorder prediction 44 74 - -
Tsu03g01553 544 MobiDBLite consensus disorder prediction 1 80 - -
Tsu03g01553 544 ProSiteProfiles EF-hand calcium-binding domain profile. 425 460 IPR002048 GO:0005509
Tsu03g01553 544 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01553 544 CDD STKc_CAMK 88 345 - -
Tsu03g01553 544 Gene3D Phosphorylase Kinase; domain 1 89 173 - -
Tsu03g01553 544 ProSitePatterns EF-hand calcium-binding domain. 474 486 IPR018247 -
Tsu03g01553 544 ProSitePatterns Protein kinases ATP-binding region signature. 94 121 IPR017441 GO:0005524
Tsu03g01553 544 ProSiteProfiles EF-hand calcium-binding domain profile. 500 531 IPR002048 GO:0005509
Tsu03g01553 544 ProSiteProfiles EF-hand calcium-binding domain profile. 461 496 IPR002048 GO:0005509
Tsu03g01553 544 ProSiteProfiles EF-hand calcium-binding domain profile. 389 424 IPR002048 GO:0005509
Tsu03g01553 544 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Tsu03g01553 544 ProSitePatterns EF-hand calcium-binding domain. 438 450 IPR018247 -
Tsu03g01553 544 SUPERFAMILY Protein kinase-like (PK-like) 72 373 IPR011009 -
Tsu03g01553 544 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01553 544 SUPERFAMILY EF-hand 386 526 IPR011992 -
Tsu03g01553 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Tsu03g01553 544 Gene3D Transferase(Phosphotransferase) domain 1 174 353 - -
Tsu03g01553 544 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 34 534 - -
Tsu03g01553 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 34 534 - -
Tsu03g01553 544 MobiDBLite consensus disorder prediction 8 43 - -
Tsu03g01553 544 Gene3D - 354 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01553 Tsu-Chr3 15373706 15376896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01553 1 539 EF-hand Containing Proteins AT5G12180 77.922 0.0 872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu03g01553 Pkinase 8.6e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01553 K13412 - gmx:100781355 908.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01553 03 15373706 15376896 Tsu05g03636 05 47704948 47707803 PCT