Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01552 ATGGATAGTTCTGGAATCAGTGGTCCAATTCCACAGGCATTTGCAAGCCTTAAGAATATGGTGCTATTATATGCTTCAGACAATAATCTCACCGGTAAAATACCCGACTTCATAGGAAGTTGGTCTAATCTTCAAACCTTGAGGTTTCAGGGTAATTCTTTTGAAGGTCCAATACCGTCatcattttccaatttgacTTCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGTAGTTCCTCATTGAATGTAATAAAGAACTTGAAGTCTATGTCAATCTTAGAATTGAGAAACAACAATATTTCTGGTTCAATTCCTTCCACCATTggagaatttcaaaatttgaccaTGCTGGACTTGAGCTTCAATAAAATCTCAGGAAATATACCCGgatcaattttcaatttgagTTTACTCTCTTCCTTGTTTCTTGGAAATAACACACTTAGTGGCAATCTCCCTCAGCAGAAAAGTTCATTTCTTAACAACATAGACTTGTCATACAATGATCTATCGGGAAGCCTCCCTTCTTGGACAAACGATCTAAATTTACAACTGAACGTAGTTGCCAACAACTTGACTATAGTAAATTCAAATACCAGTGGTTTGCCTACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCAAGATATTCTGACTTTGCGATCAAGTGCGGTGGTCCACAAATTACAACTCCAGATGGAATTGTGTATCAAACGGACAATGAGACACTTGGTCCTGCTACATACTTCGTTACTGATACAAATAGATGGGCTGTTAGTAATGTTGGAATGTTTATAGGAAGCAACGATCCTCTTCTGTTCAAAAATTCTGTTTCAAATCAGTTCACTCATACTGTGAACTCAGAGCTTTTTAAGACTGCTCGGCTCTCTGCATCATCATTAAGATATTATGGTCTCGGGCTAGAAAATGGTTTTTACAACATTACCCTCCAATTTGCAGAAACAGCTATTTTAGATTCTACCACATGGAAAAGCCTCGGGAGACGAGTCTTTGATATTTATATCCAGGGGACTCTTGTTTTGAAGGATTTTGACATACAAAGGGAAGCTGGAGGTGTGTCTTTTAGAGCTGTTCAAAAGCAATTTAGGTTTGAAGTGAAAGAAAACTATCTTGAGGTCCATCTTTTTTGGGCCGGAAAAGGGACTTTGTCCATACCTGGACCTGGCGAAATTACTTATGGGCCCTTGATTCAAGCCATCAGTGCTATCCCAGATTTTGTACCTACTGTCAGCAATAAACCTCCCAGCTCTAGCAGTAAAAAGAGTAGCGCGGGTCTGATCATTGGAATTGTTGTTGGTGTTGGAGTTATTTGCTTACTAGCAGTTTTGACCATTTTCTATATCATTCGGAGAAGAAAACAATATGATGACGATGATGATCTTGTAGGCATTGATACCATGCCAAACACTTTCAGCTATTATGAGTTAAAAAATGCTACAAGCGACTTCAATCGTGACAATAAACTTGGAGAGGGGGGTTTTGGACCAGTTTATAAGGGGACACTTAATGATGGAAGGCTTGTGGCTGTAAAACAATTATCTATAGGATCCCATCAAGGAAAGAGCCAGTTTGTAGCAGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTCTTGTCTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTACTCAATTGGTCAACCCGCTATGACATTTGCATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCACGGCTCCGGATTGTGCACCGCGATGTGAAAGCTAGTAATATTCTACTCGACTCTGAGCTTGTCCCAAAAATATCTGACTTTGGATTAGCCAAATtatatgatgataaaaaaacGCATATAAGCACCCGTGTTGCTGGGACGATTGGATATCTTGCACCGGAGTATGCCATGCGTGGACACCTCACAGAGAAAGCGGATGTTTTTTCCTTTGGTGTTGTGGCTCTTGAGTTAGTTAGTGGGAGGCCAAATTCCGATCCAAGTTTGGAAGAAGAAAAGACGTATCTTCTAGAATGGgCTTGGCAACTTCACGAAAAGAACTGTATAAATGATCTGATAGATTCTAGACTATCAGAATTCAACAAGAAAGAAGTCCAACGCCTTGTGAAAATAGGGCTTTTGTGCACTCAAACATCACCAAACTTACGGCCATCAATGTCACGGGTAGTCGCAATGCTTTCAGGAGATATTGAAGTGAGTGCTATAATATCAAGGCCCGGATATTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCTTGACTGATATTTCAACGACTGGGTTGGATTCAAGTTATTACAATTCATCGTCAAATCCCAGCACAGTTGGTGGTGCATATATCCATTCACCAAATGATCCATCTAAATCCATCCTTCATTAG 2496 0.3862 MDSSGISGPIPQAFASLKNMVLLYASDNNLTGKIPDFIGSWSNLQTLRFQGNSFEGPIPSSFSNLTSLTELRISGLSNGSSSLNVIKNLKSMSILELRNNNISGSIPSTIGEFQNLTMLDLSFNKISGNIPGSIFNLSLLSSLFLGNNTLSGNLPQQKSSFLNNIDLSYNDLSGSLPSWTNDLNLQLNVVANNLTIVNSNTSGLPTGLNCLQKNFPCNRGAARYSDFAIKCGGPQITTPDGIVYQTDNETLGPATYFVTDTNRWAVSNVGMFIGSNDPLLFKNSVSNQFTHTVNSELFKTARLSASSLRYYGLGLENGFYNITLQFAETAILDSTTWKSLGRRVFDIYIQGTLVLKDFDIQREAGGVSFRAVQKQFRFEVKENYLEVHLFWAGKGTLSIPGPGEITYGPLIQAISAIPDFVPTVSNKPPSSSSKKSSAGLIIGIVVGVGVICLLAVLTIFYIIRRRKQYDDDDDLVGIDTMPNTFSYYELKNATSDFNRDNKLGEGGFGPVYKGTLNDGRLVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLLLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDPSLEEEKTYLLEWAWQLHEKNCINDLIDSRLSEFNKKEVQRLVKIGLLCTQTSPNLRPSMSRVVAMLSGDIEVSAIISRPGYLTDWKFDDVSSILTDISTTGLDSSYYNSSSNPSTVGGAYIHSPNDPSKSILH 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01552 831 Pfam Leucine rich repeat 92 150 IPR001611 GO:0005515
Tsu03g01552 831 CDD STKc_IRAK 503 764 - -
Tsu03g01552 831 ProSiteProfiles Protein kinase domain profile. 497 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01552 831 Pfam Malectin domain 226 414 IPR021720 -
Tsu03g01552 831 ProSiteProfiles Leucine-rich repeat profile. 115 137 IPR001611 GO:0005515
Tsu03g01552 831 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 1 814 - -
Tsu03g01552 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Tsu03g01552 831 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 814 - -
Tsu03g01552 831 Gene3D - 226 418 - -
Tsu03g01552 831 Pfam Protein tyrosine and serine/threonine kinase 500 764 IPR001245 GO:0004672|GO:0006468
Tsu03g01552 831 SMART serkin_6 497 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01552 831 SUPERFAMILY L domain-like 5 193 - -
Tsu03g01552 831 Gene3D Phosphorylase Kinase; domain 1 469 572 - -
Tsu03g01552 831 Gene3D Transferase(Phosphotransferase) domain 1 573 773 - -
Tsu03g01552 831 SUPERFAMILY Protein kinase-like (PK-like) 480 789 IPR011009 -
Tsu03g01552 831 Gene3D Ribonuclease Inhibitor 1 80 IPR032675 -
Tsu03g01552 831 Gene3D Ribonuclease Inhibitor 81 205 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01552 Tsu-Chr3 15363603 15370292 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01552 1 790 Receptor kinase-like Gene Family AT1G56120 64.349 0.0 1031
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g01552 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01552 - - mtr:MTR_8g445800 1336.24