Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01548 ATGAGGCCATGTATTTTGGGTTCAGCACTTGTAGTTATTGCTCTTTGTGTCTTCACCAGTTTGTGTAACTTTGCACAAGCACAAGCACAACCTCAAACTTCAAATGCTACTACAGATCCTTATGAAGCTGGAGTTATCAATTCAATATTTAGAAAATGGGGCATATTGAACACAGTAGATAAAACTCAATGGAACATCAGCGGTGAGATATGTAGCGGAAGTGCCATTgataccaccaccaccattgaTGATGGACCTCATAACCCATTCATCAAATGCGATTGTTCTTTCAACAATAAAACTACTTGCCGCATCACCGCACTGAAAGTTTATGCATTGGATGCGATTGGTCAAATTCCACCAGAGTTATGGACTCTAATATATCTCACCAATTTGAACCTTGGACAGAATTACTTGACGGGATCTCTACCTCCTGCGATTGGAAATCTGACTCGTATGCAGTACATGAGCTTTGGCATGAATGCTCTGTCAGGACAGCTTCCGAAGGAATTGGGAAATCTTACTCAATTGATTTCATTGTCTTTTGGGTCTAACAAGTTATCAGGGCCTTTACCATCTGAACTTGGAAATCTGGTAAAGCTACAACAACTCTACATGGATAGTTCTGGAACCGATGGTCCAATTCCACACACAATTGCAAGTCTTAAGAATTTGAAGATAGTATGGGGTTCAGACAATAAATTCACAGGTAGAATACCCGACTTCATAGGAAATTGGTCTAATCTTCAAGTCTTGAGGTTTGAGGGTAATTCTTTTGAAGGTCAAATACCCTCatcattttccaatttgacTTCTTTGACAGAATTGAGAATAAGTGGTTTATCTAATGGCAGTTCCTCATTGAACGTAATAAGGAACATGAAGTCTTTGACAATCTTAGAATTGAGAAATAACAATATTTCGGGTTCAATTCCTTCCACCATTggagaatttcaaaatttgacccAGCTGGACTTAAGCTTCAATAAAATCTCAGGAAAAATACCGggatcaatttttaatttgcgTTCACTGGCTTACTTATTTCTTGGAAATAACACACTTAGTGGTACTCTCCCTCTGCAGAAAAGTTCAGTTCTTACGAACATAGACTTGTCATACAATGATCTATCAGGAAGCCTCCCCTCTTGGATAAACGAACTAAAGTTACAACTGAACTTAGTTGCCAACAACTTGAcaataataaattcaaaaacCAGTGGTTTGCCTACTGGGCTCAACTGTCTCCAGAAAAATTTTCCATGCAATCGTGGTGCTGCAAGATATTCTGAGTTTGCAATCAAGTGCGGTGGTCCGCCAATTAGAGCTACAGATGGAGTTTTGTATGAGGAGGACAATAATACACTTGGTTCTGCTACATACTTTGTTACTAATACAAATAGGTGGGCTGTTAGTAATGTTGGAATATTTGATGGGAGCAGCAATTCTTTGTTCAAAAGTTTTGTCACAAATCAATTCACTCACACTGTGAACTCGGAGCTTTTTCAAACTGCTCGAATCTCTGCATCATCATTAAGATATTACGGTCTCGGGCTAGAAAATGGTTTTTACAACATTACCCTCCAATTTGCGGAAACAGCTATTCTGGATTCTACCACATGGAAAAGCCTCGGGAGACGAGTCTTTGATATCTATGTCCAGGGGACTCTTGTTTTGAAGGATTTTGACATACAAAGAGAAGCTGGAGGTGTGTCTTACAGAGCCGTTCAAAAGCAATTTAGGTCTGAAGTGAAAGAAAACTATCTTGAGGTCCATCTTTTCTGGGCAGGAAAAGGGACTTGCTGCATACCTGCCCAAGGTACTTATGGGCCCTTGATTCAAGCCATCAATGCTATCCCAGATTTCATATCTACTGTCAGCAATAAACCTCCCGGCACTAAAAAGAATAGAACAGGTCTAATCATCGGAGTTGTTCTGGGTGTTGGAGCTATTTTCATTCTAGCAGTTTTTGCCATTTTCTATATCATTCGAAGAAAACAATATGATGACGATGATGAGCTTTTAGGCATTGATACGATGCCAAACACTTTTAGCtattatgaattaaaaatcGCTACAAGTGACTTCAATCGCGACAATAAACTTGGAGAGGGGGGTTTTGGACCTGTTTATAAGGGGACACTTAATGATGGAAGAATTGTGGCTGTAAAACAATTATCTATCGGATCCCATCAAGGAAAGAGTCAGTTTGTAGCTGAGATTGCTACTATATCTGCTGTGCAACACCGTAATCTTGTCAAATTATATGGATGTTGTATTGAAGGGAGTAAAAGACTTCTTGTCTACGAGTATTTAGAAAATAAGAGTCTTGATCAAGCATTGTTTGGAAATGTTTTATTACTCAATTGGTCAACCCGCTATGACATTTGCATGGGTGTTGCAAGAGGTTTGACATATTTACACGAGGAGTCACGGCTCCGGATTGTGCACCGCGATGTGAAAGCTAGTAATATTCTACTCGACTCTGAGCTTGTCCCAAAAATATCTGATTTTGGATTGGCCAAATtatatgatgataaaaaaacGCATATAAGCACCCGTGTTGCTGGGACGATTGGATATCTAGCACCGGAGTATGCAATGCGTGGACACCTCACAGAGAAAGCGGATGTTTTTTCCTTTGGTGTTGTGGCTCTCGAGTTAGTTAGTGGGAGGCCAAATTCTGATTCAAGTTTAGAAGGAGAAAAGATGTATCTCCTGGAATGGgcTTGGCAGCTTCATGAAAAGAACTGTATAAATGATCTGATAGATTCTAGACTATCAGAATTCAACACAGAAGAAGTCCAATGCCTTGTGAAACTAGCACTTTTGTGCACTCAGACATCACCAAATCTACGGCCATCAATGTCACGTGTAGTGGCAATGCTTTCAGGAGATATTGAAGTGAGTGATGTAACATCAAGGCCCGGATACTTGACTGACTGGAAATTTGACGATGTTAGCAGCATCATGACTGATATTTCAATGAGAGGATTGGATACAAGTTATTACAATTCATCAGCAAGTCCCAGCAAAGTTGGTGGTGCCGGTGCATATATTCATTCACCAATTGATCCATCTAAATCCATCCTTCAGGAGACTGTTAGCGATGGTAGGTAA 3120 0.3853 MRPCILGSALVVIALCVFTSLCNFAQAQAQPQTSNATTDPYEAGVINSIFRKWGILNTVDKTQWNISGEICSGSAIDTTTTIDDGPHNPFIKCDCSFNNKTTCRITALKVYALDAIGQIPPELWTLIYLTNLNLGQNYLTGSLPPAIGNLTRMQYMSFGMNALSGQLPKELGNLTQLISLSFGSNKLSGPLPSELGNLVKLQQLYMDSSGTDGPIPHTIASLKNLKIVWGSDNKFTGRIPDFIGNWSNLQVLRFEGNSFEGQIPSSFSNLTSLTELRISGLSNGSSSLNVIRNMKSLTILELRNNNISGSIPSTIGEFQNLTQLDLSFNKISGKIPGSIFNLRSLAYLFLGNNTLSGTLPLQKSSVLTNIDLSYNDLSGSLPSWINELKLQLNLVANNLTIINSKTSGLPTGLNCLQKNFPCNRGAARYSEFAIKCGGPPIRATDGVLYEEDNNTLGSATYFVTNTNRWAVSNVGIFDGSSNSLFKSFVTNQFTHTVNSELFQTARISASSLRYYGLGLENGFYNITLQFAETAILDSTTWKSLGRRVFDIYVQGTLVLKDFDIQREAGGVSYRAVQKQFRSEVKENYLEVHLFWAGKGTCCIPAQGTYGPLIQAINAIPDFISTVSNKPPGTKKNRTGLIIGVVLGVGAIFILAVFAIFYIIRRKQYDDDDELLGIDTMPNTFSYYELKIATSDFNRDNKLGEGGFGPVYKGTLNDGRIVAVKQLSIGSHQGKSQFVAEIATISAVQHRNLVKLYGCCIEGSKRLLVYEYLENKSLDQALFGNVLLLNWSTRYDICMGVARGLTYLHEESRLRIVHRDVKASNILLDSELVPKISDFGLAKLYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKADVFSFGVVALELVSGRPNSDSSLEGEKMYLLEWAWQLHEKNCINDLIDSRLSEFNTEEVQCLVKLALLCTQTSPNLRPSMSRVVAMLSGDIEVSDVTSRPGYLTDWKFDDVSSIMTDISMRGLDTSYYNSSASPSKVGGAGAYIHSPIDPSKSILQETVSDGR 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01548 1039 Gene3D Ribonuclease Inhibitor 284 415 IPR032675 -
Tsu03g01548 1039 SMART serkin_6 696 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01548 1039 Gene3D Ribonuclease Inhibitor 43 283 IPR032675 -
Tsu03g01548 1039 SUPERFAMILY Protein kinase-like (PK-like) 679 988 IPR011009 -
Tsu03g01548 1039 Gene3D - 430 620 - -
Tsu03g01548 1039 Gene3D Transferase(Phosphotransferase) domain 1 772 974 - -
Tsu03g01548 1039 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 143 1015 - -
Tsu03g01548 1039 Pfam Leucine rich repeat 296 355 IPR001611 GO:0005515
Tsu03g01548 1039 ProSiteProfiles Protein kinase domain profile. 696 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01548 1039 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Tsu03g01548 1039 SUPERFAMILY L domain-like 104 406 - -
Tsu03g01548 1039 Pfam Malectin domain 431 616 IPR021720 -
Tsu03g01548 1039 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 143 1015 - -
Tsu03g01548 1039 CDD STKc_IRAK 702 963 - -
Tsu03g01548 1039 Gene3D Phosphorylase Kinase; domain 1 667 771 - -
Tsu03g01548 1039 Pfam Protein tyrosine and serine/threonine kinase 699 963 IPR001245 GO:0004672|GO:0006468
Tsu03g01548 1039 ProSiteProfiles Leucine-rich repeat profile. 320 342 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01548 Tsu-Chr3 15265465 15288349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01548 110 283 Receptor kinase-like Gene Family AT1G56120 25.714 2.62e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g01548 PK_Tyr_Ser-Thr 3.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01548 - - mtr:MTR_8g445800 1625.91