Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01541 ATGGTATCCTGCTTGAAGCCACAAAGCAGCAATGAAGATGATTCTGTCATACTCTTTTCAACTTCTAATTCTTCCATTAGtccttcttcctcttctttcaACCATTCACCACCACCTTCTTCATACAAACTTTCCATCAAAAACCTCACCTATACTTTGCACCCTCATAAAACCATTATACccttttcattttctcacttGACTCAAAAACCACATCCTATAAATATACTCAAATCTGTCTCTTTTGTTGCTCGAACCTCCGAGATTGTTGCGGTTGTCGGTCCTAGTGGCACTGGAAAATCAACCCTTTTACGAATAATCGCGGGGCGAGTTAAAGATAAAGACTTCAATCCAAAAACTATATCAATCAATGATCAACCTATGAGTACTCCATCtcatttaagaaaaatttgtggCTTTGTTTCACAAGAAGATAACTTGCTTCCACTTCTAACAGTGAAAGAAACATTGCTTTTCAGTGCAAAGTTtagattaaaagaaatgacacCAAAAGAAAGAGAATTGAGAGTTGAAAATTTAATGCATGAGTTAGGACTTTTTCATGTTCAAGATAGTTTTGTTGGTGATGAAGAAAATAGAGGAGTTTCTGGTGGTGAAAGAAAAAGAGTATCAATTGGTGTTGATATGATTCATAATCCACCAATTTTAGTCTTAGATGAACCAACTTCAGGACTTGATAGTACTTCAGCTCTTCATGTAATTGAGCTTTTGTCTTCAATGGTTAAATCAAAACAAAGGATAGTGATCCTTTCAATTCATCAACCTAGCTATAGAATATTGCAATATATTTCTAAGTTCTTAATCCTTTCTCATGGATCAGTTGTTCATAATGGTAGTTTGGAATCATTAGAGAAAACCATATCCAATTTAGGATTTCAAATTCCATTACAACTTAATGCTCTTGAATATTCAATGGAAATTATACAAAGTTTAGAAGATTCTAGTAGTTCCGTCTCCGTCGTTGCTGACGACGGAGACGAAACTTGTTTTCCAAGTTACATGTggcaagaagaagaaaagggttATGAAAAGGAAAGTTTTGGAAATAATTGTTATGTAAACATGATGGAAATACTATTTTTATGTTCAAGATTTTGGAAGATTATTTATAGAACAAAACAACTTTTCTTAGCAAGAACAATGCAAGCATTAGTTGGTGGATTTGGTTTAGCAAGTGTTTATATAAAAGTAAGAAAAGATGAAGATGGAATTGCAGAAAGATTAGGTCTTTTTgcatttagtttaagttttctTTTATCTTCAACAGTTGAAGCACTTCCAATATATCTTCAAGAAAGAACTGTTCTTATGAAAGAATCATCAAGAGGAGCTTACAAAATCTCTTCTTACATGATAGCCAacacttttgtttttcttccttttttgtttgttgtttcaACACTTTTTGCAGTTCCTGTTTATTGGATTGTAGGACTCAATCCTTCAATCACTTCCttcatttttttcacttttgtgGTTTGGCTTATTGTGCTCATGGCAAGTTCTTTAGTACTTTTCTTAAGTTCTGTGTCTCCTGATTTCATTTCAGGAAATTCTCTAATCTGCACTGTTCTTGGAGCTTTCTTTTTGTTCTCTGGTTACTTTATACCAAAAGAGATTATTCCAAAATATTGGCTTTTTATGTATTATGTGTCACTTTATAGGTACCCTTTGGATGCATTACTAACAAATGAGTATTGGAATGTTGGAAATGAGTGTTTCTCAAAAGGGTCTTCTTCATCAAAGTGTTTGGTTACTGGATTTGATGTGTTGAAGAGTAGAGGTATTGAAAAGGATAATAGGTGGATCAATGTGGCAATAATGGTTGGATTCTTTGTGTTTTATCGTTTGCTTTGTTGGATTATACTTGCTAGAAAAGCATCCAAGACAACAATATAA 1920 0.3078 MVSCLKPQSSNEDDSVILFSTSNSSISPSSSSFNHSPPPSSYKLSIKNLTYTLHPHKTIIPFSFSHLTQKPHPINILKSVSFVARTSEIVAVVGPSGTGKSTLLRIIAGRVKDKDFNPKTISINDQPMSTPSHLRKICGFVSQEDNLLPLLTVKETLLFSAKFRLKEMTPKERELRVENLMHELGLFHVQDSFVGDEENRGVSGGERKRVSIGVDMIHNPPILVLDEPTSGLDSTSALHVIELLSSMVKSKQRIVILSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEKTISNLGFQIPLQLNALEYSMEIIQSLEDSSSSVSVVADDGDETCFPSYMWQEEEKGYEKESFGNNCYVNMMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLASVYIKVRKDEDGIAERLGLFAFSLSFLLSSTVEALPIYLQERTVLMKESSRGAYKISSYMIANTFVFLPFLFVVSTLFAVPVYWIVGLNPSITSFIFFTFVVWLIVLMASSLVLFLSSVSPDFISGNSLICTVLGAFFLFSGYFIPKEIIPKYWLFMYYVSLYRYPLDALLTNEYWNVGNECFSKGSSSSKCLVTGFDVLKSRGIEKDNRWINVAIMVGFFVFYRLLCWIILARKASKTTI 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01541 639 SMART AAA_5 86 288 IPR003593 -
Tsu03g01541 639 Pfam ABC-2 type transporter 365 573 IPR013525 GO:0016020|GO:0140359
Tsu03g01541 639 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 1 632 - -
Tsu03g01541 639 Pfam ABC transporter 77 230 IPR003439 GO:0005524
Tsu03g01541 639 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 62 303 IPR003439 GO:0005524
Tsu03g01541 639 PANTHER ABC TRANSPORTER G FAMILY MEMBER 23 1 632 - -
Tsu03g01541 639 ProSitePatterns ABC transporters family signature. 202 216 IPR017871 GO:0005524
Tsu03g01541 639 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 294 IPR027417 -
Tsu03g01541 639 Pfam ABC-2 type transporter 260 327 IPR043926 GO:0140359
Tsu03g01541 639 Gene3D - 62 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01541 Tsu-Chr3 15195376 15197295 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01541 74 332 Calmodulin-binding Proteins AT2G36910 27.437 3.97e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01541 K05681 - gmx:100783883 989.564