Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01536 ATGAACATTCTTCCTACCATACTTGTTATTGCTAACATACTATTTTTCTTCTCCAAAATTTCTTGTGCAACAGATACAATTACACAATCACAACCACTTCATGATGGAAGCACCTTGGTTTCTAAGGGTGAAGTATTCGAACTCGGTTTCTTTAATCCTGGTAATTCCAACAACCGTTATGTTGGAATTTGGTACAAAAATATCCCCGTTAGAAGAGTTGTTTGGGTTGCCAACCGTGACAACCCAATCAAAGATAATTCTAGCAAGTTGATCATAAGTCAAGGTCGATTCCTTGCGCTTGTCAATAAGAATCAATCTCTTTTATGGTCaacaaacacaacaacaaagGTTTCAAATCCAATTGTGCAACTCTTGGATAATGGAAATTTAGTACTTAAAAATGATGGTGAAGAAAATTTTCTATGGCAAAGCTTTGATTATCCTTGTGATACAATATTACCCGAGATGAAGGTTGGATGGGACAAAAAAAGAGGTCTTGCTAGAAATCTTACTGCATGGAAAAATTGGGATGATCCATCTTCAGGTGAGTTTACTTCAGCTATGATTCTAACTCCTAATCCTGAAAGCTTTATGTTTGAAGGCTCAACAAAAGTCTTTAGGACAGGACCATGGACCGGTTCACGATCTAGTGGAGTAACTAGTGGAATAATTGGATTTCAAGAAAATCCACTTTTTCATTATGAATTTGTGAACAATGAAAATGAGGTATATTATATGTTCACACTCAAAAATAGTTCTGTGGTTTCTATAATTGTTTTTAACCAAACAAATTCTCATCGTCAACGCCTCGTTTGGATTCCCGAATCCAAAATATGGAGTGTTTACCAAACCTTACCGCAAGATAGTTGTGATGCATACAATGTTTGCGGGGCAAATGGGCAATGTGCACTTGATGCATCACCCATGTGCCAGTGTTTAGATGGATTTAAGCCGAAATCACCAcaacaatggaatggaatggactGGAGACAAGGATGTGTGCGTAATGGTAATTGGAGTTGCGGGGTTAAAAATAGAGACgggtttaaaaaaattagtgggaTGAAATTGCCAGATACTACACATTCATGGATTGATGAGAAAATGACACTTGAAGATTGCAAGGCTAAATGCTTAGAGAATTGTTCGTGTAGTGCTTACTCAAGTTTAGACTCAACTGGAACGGTTAGCGGGTGTTCTATCTGGTTTGGTGATCTTGATGATATGAGAGTTTTACAAAGAGGAAATGACGTATATGTTCGAGTGGACTCTTCAAACATCGGTGATGAAAATGGACATAAAAAAATGGTAGAATTGGTGTTATCAATTACAGTTCCAGTAGTCGTTGTGATGGTATTGGCATTCACCTACATTTGTTATATAAGAAAGGCAAAATCTAAAGagaaaatcacaAGGTTGGTAGAGAAAGATGAAGACACAAATGAAGATTTTGAGCTTCCTATCTATGATCAAGCTACAATACTCAAGGCAACCAATAACTTCTCTTTCAACAATAAGCTAGGTGAAGGTGGTTTTGGACCGGTATATAAGGGTATATTGCTTGATGGACAAGAAATTGCTGTCAAAAGACTATCAAAGAGTTCTGGACAAGGATCGAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACATCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATTGAAGGAGATGAGAAAATGTTGATCTATGAATACATGCCGAATAATAGCCTCGATTCATTTCTTTTAGATCCAATACAAAGTAAATTGTTAGATTGGTCCGCACGCTTTAACATTATATTTGGAATAGCTCGAGGACTTCTTTATCTTCATCAAGACTCAAGATTAAGGATTATACACAGAGATTTGAAAGTGAGTAATATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCTTGGCTAGAATGTGTGGAGGTGATCAAATTGAAGGGAGAACAAACAAAATAGTTGGCACATACGGTTATATGGCTCCAGAATATGCTATTGATGGTCTATTCTCTATAAAATCAGATGTCTTTAGCTTTGGAGTATTATTATTAGAGATTATCAGTGGAAAGAAAAATAGAGCACGAAGCTACCGAGAACACGATCATAATCTTATTGGATATGCATGGAGATTGTGGAAAGAGGGAATTCCACTAAAATTGATTGATGATAATATAAGGGACTCATGCATTGAAATTGAAGCAATACGTTGTATTCAAATTGGTCTactatgcctacaacatcatcCTGATGATAGACCAAACATGACATCTGTGGTTGTGATGTTAAATAGCGAAAATACTCTATCCATACCTAATGAACCTGGTTTCTTGATTAAAAAGTTCTCACCTGAAGGAGAACCTTCTTTAGGAAAAGAAACATCTTCAACAAATGAAATAACTATATCTCTTTTAGAGGCTAGATAG 2454 0.3443 MNILPTILVIANILFFFSKISCATDTITQSQPLHDGSTLVSKGEVFELGFFNPGNSNNRYVGIWYKNIPVRRVVWVANRDNPIKDNSSKLIISQGRFLALVNKNQSLLWSTNTTTKVSNPIVQLLDNGNLVLKNDGEENFLWQSFDYPCDTILPEMKVGWDKKRGLARNLTAWKNWDDPSSGEFTSAMILTPNPESFMFEGSTKVFRTGPWTGSRSSGVTSGIIGFQENPLFHYEFVNNENEVYYMFTLKNSSVVSIIVFNQTNSHRQRLVWIPESKIWSVYQTLPQDSCDAYNVCGANGQCALDASPMCQCLDGFKPKSPQQWNGMDWRQGCVRNGNWSCGVKNRDGFKKISGMKLPDTTHSWIDEKMTLEDCKAKCLENCSCSAYSSLDSTGTVSGCSIWFGDLDDMRVLQRGNDVYVRVDSSNIGDENGHKKMVELVLSITVPVVVVMVLAFTYICYIRKAKSKEKITRLVEKDEDTNEDFELPIYDQATILKATNNFSFNNKLGEGGFGPVYKGILLDGQEIAVKRLSKSSGQGSKEFKNEVILCAKLQHRNLVKVVGCCIEGDEKMLIYEYMPNNSLDSFLLDPIQSKLLDWSARFNIIFGIARGLLYLHQDSRLRIIHRDLKVSNILLDNDMNPKISDFGLARMCGGDQIEGRTNKIVGTYGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRARSYREHDHNLIGYAWRLWKEGIPLKLIDDNIRDSCIEIEAIRCIQIGLLCLQHHPDDRPNMTSVVVMLNSENTLSIPNEPGFLIKKFSPEGEPSLGKETSSTNEITISLLEAR 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01536 817 Gene3D Transferase(Phosphotransferase) domain 1 577 782 - -
Tsu03g01536 817 ProSiteProfiles PAN/Apple domain profile. 341 425 IPR003609 -
Tsu03g01536 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 179 IPR036426 -
Tsu03g01536 817 SMART blect_4 30 148 IPR001480 -
Tsu03g01536 817 Pfam S-locus glycoprotein domain 206 320 IPR000858 GO:0048544
Tsu03g01536 817 SMART ntp_6 344 422 IPR003609 -
Tsu03g01536 817 CDD B_lectin 30 148 IPR001480 -
Tsu03g01536 817 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 32 811 - -
Tsu03g01536 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Tsu03g01536 817 SMART serkin_6 501 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01536 817 ProSiteProfiles Bulb-type lectin domain profile. 24 145 IPR001480 -
Tsu03g01536 817 SUPERFAMILY Protein kinase-like (PK-like) 483 782 IPR011009 -
Tsu03g01536 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 811 - -
Tsu03g01536 817 Pfam D-mannose binding lectin 73 174 IPR001480 -
Tsu03g01536 817 Pfam PAN-like domain 341 409 IPR003609 -
Tsu03g01536 817 Gene3D Phosphorylase Kinase; domain 1 461 576 - -
Tsu03g01536 817 ProSiteProfiles Protein kinase domain profile. 501 778 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01536 817 Pfam Protein tyrosine and serine/threonine kinase 502 771 IPR001245 GO:0004672|GO:0006468
Tsu03g01536 817 ProSiteProfiles EGF-like domain profile. 286 322 IPR000742 -
Tsu03g01536 817 PIRSF SRK 1 817 IPR024171 GO:0004674
Tsu03g01536 817 Gene3D Hepatocyte Growth Factor 340 421 - -
Tsu03g01536 817 CDD STKc_IRAK 507 773 - -
Tsu03g01536 817 CDD PAN_AP_plant 340 422 - -
Tsu03g01536 817 Gene3D - 18 145 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01536 Tsu-Chr3 15129880 15133026 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01536 439 789 Receptor kinase-like Gene Family AT4G23230 54.830 1.62e-129 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g01536 PK_Tyr_Ser-Thr 7.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01536 - - gmx:100790436 1163.29