Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01534 ATGCTTTTAATTACCAAGTTACTATTAGTATTATTACTCTTCTCCAAAATTTCCTCTGCAATAGATACCATTACACAATCACAGTCACTTCAAGATGGAAGCACCTTGCTTTCTAAAGGTGGAATATTTGAGTTGGGTTTCTTCAATCTCGGTAATTCAACAAACCGTTATGTTGGAATTTGGTACAAAAATATCCCAGTTAGAAGAGTTGTTTGGGTCGCCAACCGTGACAACCCAGTTAAAGACAATTCTAGCAAGTTGATCATAAGTCGAGATGGAAACCTTGCGCTtgtaaatcaaaatcaaactattCTATGGTCAACAAACACAACGACAAAAATTGCAATTTCAAGTCTAATTGTGCAACTTTTGGACGATGGAAACTTAGTACTTAAAAACGAGAAGCAGAACAACACTAACGAAAATTTTCTATGGCAGAGTTTTGATTATCCTTCTGATACAATATTACCAGGAATGAAGGCGGGATGGGACATAAAAAAGGGCCTTGATAGGAATCTCGTTGCATGGAAAAATTGGGATGATCCGTCTTCAAGTGATTTTACTTCAGCTATGGTACTAACTCCTAATCCTGAAAGCTTTATTTGGAAAGGCTCAAGAAAACTCTACAGAACAGGACCATGGACCGGTCCTCGATCTAGTGGAATAGTTGGATTGACAGAAAATCCAATTTATGATTATGAGTTTGTCAACAATGAAGATGAAGTGTATTATATGTTCACACTCAAGAATATTTCTGTAGTTTCTATAGTTGTTTTAAACCGAACAAGTTCTGTTCGTCAACGTATCATTTGGATTTCAGAATCCAAAACATGGAATGCTTACCTAACATTGCCACAAGATAGTTGTGATGTATATAATATTTGCGGAAACAATGGGCTTTGTGCTCTAAATGAATCACCTGTGTGTCAGTGTTTGGATGGATTTAAGCCAAAGTCGCCACAACAATGGAATGCAACGGATTGGAGTCAAGGATGTGTTCCTAATGGTAATTGGAGTTGTGGGGTTAAAAATAGAGACGGGTTTAAGAGAATTGCTGCAATGAAATTGCCAGATACTACACATTCATGGATTGATGAGAAAATGACACTTGAAAATTGCAAGGCTAAATGCTTGGAAAATTGTTCGTGTAGTGCTTACTCAAGTTTAGATTCAACTGGCACTGGTAGTGGTTGTTCTATCTGGTTTGGTGATCTTATTGATCTTAGAGTTTCACAAAGTGGACAAGACCTATATATTCGAATAGACTCATCAGATATTGGTGATAAAAATggacaaataaaaatagtattggCAGTTTCAATTCCAGTTTCAATAGTCCTTGTGATGATATTGGTCTTTGCCTACATATACATAACAAAGGTGAAGTATAAAAGGAAAATAGAGAAAACTACAACGTcggaagagaaagaagaagataaatACGAAGATTTTGAACTTCCTATTTTTGATCAAGCTACAATACTCAAGGCAACGAATAACTTCTCTTTTGAAAACAAGCTCGGTGAAGGTGGTTTTGGACCGGTATATAAGGGTACATTGCTCGATGGACAAGAAATTGCTGTCAAAAGACTTTCCAGGAGTTCTGGTCAAGGAATTAAAGAGTTTAAAAATGAAGTTATATTATGTGCTAAACTTCAACACCGAAATCTTGTTAAAGTTGTTGGTTGTTGTATTGAAGGCGAGGAGAAAATGTTGATCTATGAGTACATGTCCAACAAAAGTCTCGATTCATTTCTTTTTGATCCATTTCAAAACAAATTGTTAGATTGGTCCACACGCTTTAACATTCTATTTGGAATTGCTCGGGGCCTTCTTTATCTTCATGAAGATTCAAGATTACGAATCATACACAGAGATATGAAAGTGAGTAATATTTTATTGGACGATGATATGAATCCCAAAATTTCAGACTTTGGCATGGCTAGAATGTGTGGAGGTGATCAAATTGAGGGGAGAACAAACAGAATAGTAGGCACATACGGATATATGGCACCAGAATATGTGATTGATggattattttcaataaaatcagatgtttttagttttggcgtattattattagaaattatCAGTGGAAAGAAAAATAGAGCAGATAGCTATCAAGAGCACGATCATAATCTTATTGGATATGCATGGAGGTTATGGAAAGAAGGCAAACCATTCAATttgattgatgattatttgaGGAATTCATGTATTGAATCTGAAGCATTACGTTGCATTCAAATTGGTCTtctatgcctacaacatcatcCTGATGATAGACCAAATATGGCATCTGTGGTTGTGATGCTGAGTAGTGAAAATACTTTACTGAAACCAAAGGAACCTGGTTTATTAATAAGAAGGTTCTCGGTTGACGGAGAACCTTCTCCTGAAAGACAGACATCTTCTTCGACAAATGAAATAACTATTTCACGAATAGACGCTAGATAG 2457 0.3415 MLLITKLLLVLLLFSKISSAIDTITQSQSLQDGSTLLSKGGIFELGFFNLGNSTNRYVGIWYKNIPVRRVVWVANRDNPVKDNSSKLIISRDGNLALVNQNQTILWSTNTTTKIAISSLIVQLLDDGNLVLKNEKQNNTNENFLWQSFDYPSDTILPGMKAGWDIKKGLDRNLVAWKNWDDPSSSDFTSAMVLTPNPESFIWKGSRKLYRTGPWTGPRSSGIVGLTENPIYDYEFVNNEDEVYYMFTLKNISVVSIVVLNRTSSVRQRIIWISESKTWNAYLTLPQDSCDVYNICGNNGLCALNESPVCQCLDGFKPKSPQQWNATDWSQGCVPNGNWSCGVKNRDGFKRIAAMKLPDTTHSWIDEKMTLENCKAKCLENCSCSAYSSLDSTGTGSGCSIWFGDLIDLRVSQSGQDLYIRIDSSDIGDKNGQIKIVLAVSIPVSIVLVMILVFAYIYITKVKYKRKIEKTTTSEEKEEDKYEDFELPIFDQATILKATNNFSFENKLGEGGFGPVYKGTLLDGQEIAVKRLSRSSGQGIKEFKNEVILCAKLQHRNLVKVVGCCIEGEEKMLIYEYMSNKSLDSFLFDPFQNKLLDWSTRFNILFGIARGLLYLHEDSRLRIIHRDMKVSNILLDDDMNPKISDFGMARMCGGDQIEGRTNRIVGTYGYMAPEYVIDGLFSIKSDVFSFGVLLLEIISGKKNRADSYQEHDHNLIGYAWRLWKEGKPFNLIDDYLRNSCIESEALRCIQIGLLCLQHHPDDRPNMASVVVMLSSENTLLKPKEPGLLIRRFSVDGEPSPERQTSSSTNEITISRIDAR 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01534 818 CDD PAN_AP_plant 339 421 - -
Tsu03g01534 818 Gene3D Phosphorylase Kinase; domain 1 460 576 - -
Tsu03g01534 818 ProSiteProfiles Protein kinase domain profile. 501 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01534 818 MobiDBLite consensus disorder prediction 793 818 - -
Tsu03g01534 818 CDD STKc_IRAK 507 772 - -
Tsu03g01534 818 ProSiteProfiles EGF-like domain profile. 285 321 IPR000742 -
Tsu03g01534 818 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 29 812 - -
Tsu03g01534 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 622 634 IPR008271 GO:0004672|GO:0006468
Tsu03g01534 818 MobiDBLite consensus disorder prediction 797 818 - -
Tsu03g01534 818 Pfam S-locus glycoprotein domain 209 319 IPR000858 GO:0048544
Tsu03g01534 818 PIRSF SRK 1 818 IPR024171 GO:0004674
Tsu03g01534 818 Gene3D Transferase(Phosphotransferase) domain 1 577 782 - -
Tsu03g01534 818 SMART blect_4 27 151 IPR001480 -
Tsu03g01534 818 Gene3D - 15 148 IPR036426 -
Tsu03g01534 818 Pfam Protein tyrosine and serine/threonine kinase 502 771 IPR001245 GO:0004672|GO:0006468
Tsu03g01534 818 SMART ntp_6 343 421 IPR003609 -
Tsu03g01534 818 SUPERFAMILY Protein kinase-like (PK-like) 484 772 IPR011009 -
Tsu03g01534 818 ProSiteProfiles Bulb-type lectin domain profile. 21 144 IPR001480 -
Tsu03g01534 818 ProSiteProfiles PAN/Apple domain profile. 340 422 IPR003609 -
Tsu03g01534 818 Pfam PAN-like domain 340 408 IPR003609 -
Tsu03g01534 818 SMART serkin_6 501 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01534 818 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 182 IPR036426 -
Tsu03g01534 818 Pfam D-mannose binding lectin 70 177 IPR001480 -
Tsu03g01534 818 Gene3D Hepatocyte Growth Factor 339 419 - -
Tsu03g01534 818 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 29 812 - -
Tsu03g01534 818 CDD B_lectin 27 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01534 Tsu-Chr3 15081664 15085211 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01534 435 789 Receptor kinase-like Gene Family AT4G23190 51.389 3.47e-123 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu03g01534 PK_Tyr_Ser-Thr 2.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01534 - - gmx:100790436 1150.96