Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01530 ATGGCTTTTGATGGAGATAACAATGCAACAAAACTCAACACACGGAAGAGAAAATTTGGTGATATCAAGAAAGTGGAAAAATCAAACAAGTCTCATATGATGTTCTCAAAAGGTATAATCGGAATTTTCAATAAAGTAACAGAACTCTCTATTCTGTGTGATGCAAAAACTGCACTCATTGTCACATCGCCGAACAACGAGCTCTACACATGTGGTTATCCTAATTGCGACGCCGTTATTCAACAACTTTTTACCGGAAAAGACACCTTTGaagacaaagagaaaaagaagcaaGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGATGCAATTGGAGATGAACTTGAGAAACTtacagaagaagaaaagattTTTCAAGCAATCAATGATGAGGCAACAAAGAGTGGTTCTATTTTATCTTGTTGGTGGAATGATCCTATTGATGATATGGATTTACAATCTCTTGAGGAATTTAAGACTTCTTTGGAAAAATTGAGACTTAATTTGGGTTCAGCGGAAGACGAAAAGAAGTTAATGTCCACACTTCAATCTTGA 558 0.3369 MAFDGDNNATKLNTRKRKFGDIKKVEKSNKSHMMFSKGIIGIFNKVTELSILCDAKTALIVTSPNNELYTCGYPNCDAVIQQLFTGKDTFEDKEKKKQEEIVETLRLEYDAIGDELEKLTEEEKIFQAINDEATKSGSILSCWWNDPIDDMDLQSLEEFKTSLEKLRLNLGSAEDEKKLMSTLQS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01530 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 24 70 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 SUPERFAMILY SRF-like 20 84 IPR036879 GO:0003677|GO:0046983
Tsu03g01530 185 Gene3D - 11 110 IPR036879 GO:0003677|GO:0046983
Tsu03g01530 185 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 Coils Coil 156 176 - -
Tsu03g01530 185 SMART madsneu2 14 74 IPR002100 GO:0003677|GO:0046983
Tsu03g01530 185 Coils Coil 102 122 - -
Tsu03g01530 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 11 181 - -
Tsu03g01530 185 PANTHER MADS BOX PROTEIN 11 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01530 Tsu-Chr3 15052097 15052654 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01530 22 167 Type I MADS-box Gene Family AT5G60440 32.278 1.28e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01530 SRF-TF 2.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01530 - - cam:101507050 174.481