Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01529 atgGCTTTTGATGAAAATAACGGTGCAACAAAACTCAATAGACGGAAGAGAAAATTTGGTGAAATCAAGAATGCGGAAAAACCAAACAAGTCTCATATGATGTTCTCAAAAGGTACAATCGGAATTTTCAATAAAGTAACAGAACTCTCAATTTTGTGCAACGCAAAAACTGCACTCGTTGTCACATCGCCCAACAACGAGCTCCATACATGCGGCTATCCTAATTGTGACGCCATTATTCAACAATTTTTGACCGGAAAAGACACCATTGAAGACAATGAGAAAAAGAAGCAAGAGGAGATTGTTGAAACCCTAAGGCTTGAATATGAGGTAATTGAAGATGAACTTAAGAAACTtacagaagaagaaaagaatttgCAAGCAATCAATGATGAGGCAACGAAGAGTGGTTCTATTTTATCTTGTTGGTGGAATGATCCTATTGAAGATATGGATTTAGAATCTCTTGTGGAATTTAAGACTTCTTTAGAAAAATTGAGACTTAATTTGGGTTCTGCCGAAGACGAAAAGAAATTAATGTGCACACTTCAATCTTGA 558 0.3477 MAFDENNGATKLNRRKRKFGEIKNAEKPNKSHMMFSKGTIGIFNKVTELSILCNAKTALVVTSPNNELHTCGYPNCDAIIQQFLTGKDTIEDNEKKKQEEIVETLRLEYEVIEDELKKLTEEEKNLQAINDEATKSGSILSCWWNDPIEDMDLESLVEFKTSLEKLRLNLGSAEDEKKLMCTLQS 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01529 185 ProSiteProfiles MADS-box domain profile. 15 75 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 13 179 - -
Tsu03g01529 185 SUPERFAMILY SRF-like 17 85 IPR036879 GO:0003677|GO:0046983
Tsu03g01529 185 SMART madsneu2 12 74 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 Coils Coil 95 136 - -
Tsu03g01529 185 Coils Coil 156 176 - -
Tsu03g01529 185 Gene3D - 28 111 IPR036879 GO:0003677|GO:0046983
Tsu03g01529 185 PRINTS MADS domain signature 17 37 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 PRINTS MADS domain signature 37 52 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 PRINTS MADS domain signature 52 73 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 70 IPR002100 GO:0003677|GO:0046983
Tsu03g01529 185 PANTHER MADS BOX PROTEIN 13 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01529 Tsu-Chr3 15049406 15049963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01529 33 167 Type I MADS-box Gene Family AT5G60440 30.263 5.94e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01529 SRF-TF 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01529 - - cam:101507050 175.637