Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01520 ATGGAAGAATCGATTGAGTTGCAATCAGAAGACAATAAAACCTCGATggataaaaataacaaaagaaagCTCAAAACACCGGCGCAGCTTATGGCCTTGGAAGATTTTTACAATGATCACAAATACCCCACAGAGGAAATGAAACTTGAACTCGCTAATGAATTAGCGCTGACAGAAAAGCAAATCTCAGGATGGTTTTGTCACAGAAGGTTAAAAGATAAGAGATTGATGAAAGGTGAAGTACGTGCTAATGGACGGCAAGACCGTTCAAGTGGCGTTGTTCAGGATCGTGGCAGTGGACGGCAGGATTCATGTGGAAGTACTAAGCATGACGACGATAGGTATTTGGAACCCAAAGAGGTCGAGAGTCATGGCATCTATAATCATGACCTACCAGTTGCAGATATGAACTATGCACATAGAAACCATTATACAGAAAATGATAGTGAAACCGATAACACATCATCCGAGAGTAGCTCATCTTTGCAAGAACGATTTTTTCTTCAAGGACAGGATCCGTATGATACGGAGCCTTCAAGATACGTAACACCAAATGGATCTCTTCCACCCTTAAATCCAAAGGGATATAAACCATCAggatatttaaaaatgaagGGAGAGATAGAGCATGCTGCTATAACTGCTGTTAAGAATCGGTTGGGAAGGAATTATCTGGAAGATGGTCCGCTACTTAATATAGATTTTGATACAATTCCACCAGGGGCATTTGTATTTCAAACTGCGAATCCAGTTAATGAACCATACCATGTTGCAAACCCGTCTCTTTCAAGTTCTCCTGAAGTCTCGCCTGCAAAAAGGCAATATAGTCTTAACTCTAGATATGATTCAAATTCGAACAAATTAAGTTCCCAAGATTTACAAATGGAAGGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCAGGATAAGAAATCCTACCAGCGTATAAAACAAAGAACAAACATTCAGGGCCGTGCAATTCGAGCCAATCATTTGCATGGCAAGAACTTTTCCCTGGATTTGTACGTAGACTCGACTGGGGAAGCACCTGCTTATGATAGCACTAGAAATCATAGAATAGGAACTAAACATGTAGTTGAGAGGATGAGTTCTGATTCTGCATCTAGTCCTAGTGATACAGACGAGAATAACCCGGCGATTAAGCAGACAAATCCACTACTACATGATTACAGTAACAGCAATGTGAAAAATGTACAAAGGAGTGAATATGTAAAATCTAAACCTTCAAATTCAATACGTAATTCTCGAATATCTGAGGATACTGGAGGAAGAGGGCTTTCTGAAAGAATGATAAAGGAAGAAAAGTTTAATGGGGGTAGAaagattaaaaaacaatatcatGAGTCAGATGGAGTAAGAATGCCATCGAAAGAAACAATGGTTGCAAAGCGAGCGAAAGTTGATTTACTTCATCAATATGATATTAAGCAAGCACATGTTGCTGAGATTGAACCAAGGAAAACTCAGAGATCTGCTGTGGAGATGCCATCTAGCTTTAGTGAGGATGAAACTGCAGAAACCAGTTCCTCGCTGGATTGA 1563 0.3896 MEESIELQSEDNKTSMDKNNKRKLKTPAQLMALEDFYNDHKYPTEEMKLELANELALTEKQISGWFCHRRLKDKRLMKGEVRANGRQDRSSGVVQDRGSGRQDSCGSTKHDDDRYLEPKEVESHGIYNHDLPVADMNYAHRNHYTENDSETDNTSSESSSSLQERFFLQGQDPYDTEPSRYVTPNGSLPPLNPKGYKPSGYLKMKGEIEHAAITAVKNRLGRNYLEDGPLLNIDFDTIPPGAFVFQTANPVNEPYHVANPSLSSSPEVSPAKRQYSLNSRYDSNSNKLSSQDLQMEGGDFGSLHDSDFQDKKSYQRIKQRTNIQGRAIRANHLHGKNFSLDLYVDSTGEAPAYDSTRNHRIGTKHVVERMSSDSASSPSDTDENNPAIKQTNPLLHDYSNSNVKNVQRSEYVKSKPSNSIRNSRISEDTGGRGLSERMIKEEKFNGGRKIKKQYHESDGVRMPSKETMVAKRAKVDLLHQYDIKQAHVAEIEPRKTQRSAVEMPSSFSEDETAETSSSLD 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01520 520 Gene3D - 9 92 - -
Tsu03g01520 520 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Tsu03g01520 520 SMART HOX_1 18 80 IPR001356 GO:0003677
Tsu03g01520 520 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 278 307 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 171 194 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 144 163 - -
Tsu03g01520 520 CDD homeodomain 21 75 IPR001356 GO:0003677
Tsu03g01520 520 MobiDBLite consensus disorder prediction 489 520 - -
Tsu03g01520 520 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 520 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 88 102 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 369 429 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 278 296 - -
Tsu03g01520 520 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Tsu03g01520 520 MobiDBLite consensus disorder prediction 78 116 - -
Tsu03g01520 520 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Tsu03g01520 520 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 7 24 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 499 520 - -
Tsu03g01520 520 MobiDBLite consensus disorder prediction 368 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01520 Tsu-Chr3 14865434 14869775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01520 3 520 Homeobox Transcription Factor Family AT4G03250 39.450 2.67e-75 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu03g01520 Homeodomain 7.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01520 - - mtr:MTR_3g045830 743.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01520 03 14865434 14869775 Tsu03g01520 03 14865434 14869775 ECH
Tsu03g01520 03 14865434 14869775 Tsu05g03652 05 47899178 47905162 PCT