Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01516 ATGATGTCACGTTCTGATACGATTATGATGACGACTACTTCAAGTACTTCGGATCTGAATAGAGCTGGTACAGTTGAAAGAGACATTGAGCAGGCAATTACTGCTTTAAAGAAAGGGGCTTATTTGCTTAAGTATGGAAGAAGGGGGAAGCCCAAGTTTTGCCCATTTCGGCTTTCTAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCGCCTTAAACTAACTAATGTTTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATACCCACGACCTGCGAAGGAATACCAGTCATTTTCACTTATCTACAATGACAGATCACTGGACCTGATTTGCAAAGACAAAGATGAAGCTGAGGTATGGTTCAGTGGATTGAAAGCATTGATCTCACGGAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTTTTCCATCTGAAATTAATAGTCCTCGAACATACACTCGAAGGAGTTCTCCCTTACATTCTCCATTTGATAGTAACGAAAGCTTGCAAAAGGATAGTGGGGATCACCTTGGCCTTCATAGCCCATATGAGAGCCCTCCAGACAATGGTTTAGATAAAGCATTTTCTGATGCAACTTATTATCCTATTCCTCCAAAGGGTTTCTTCCCACCAGATTCGGCCAGTGGTTCAGTCCACTCTGTGTCATCAGGAGGATCAGATAGTGTGCATGGCCACATGAAGGCGATGCCTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCTCTTCTAGCCAAGGTTCTGCCCGTGATGATGGTGATGCCTTAGGGGATGTTTTCATTTGGGGGGAAGGCGCAGGTGATGGTGTTTTGGGTGGTGGGGTTCATCGAGTTGGGAGTTGTTTTGATGTCAAAATGGATTCTCTATTGCCGAAAGCATTAGAATCAGCAGTGGTTCTAGATGTACAGAATATTGCTTGTGGCGAGCAACATGTGGCCTTAGTGACGAAACAAGGTGAAATTTTCTCTTGGGGAGAAGAATCAGGAGGCAGGCTCGGGCATGGAGTTGATTCTGATGTCCCCCATCCAAAGCTCATTGAATCTTTAAGTAATACAAATATTGAACTTGTTGCTTGCGGGGAGTATCATACTTGTGCTGTGACACTTTCAGGAGATCTTTATACATGGGGTGATGGCACTTACAATTATGGTCTTCTGGGACATGGAAACCAGGTGAGTCACTGGGTCCCAAAAAGAGTAAATGGCCCCTTGGAGGGTATACATGTTTCATCTATTTCTTGTGGCCCCTGGCATACTGCTGTTGTAACCTCTTCTGGGAAGTTATTTACTTTTGGCGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAGTGTTTCCTTGCCAAGGGAAATAGAGTCCTTGAAGGGTCTTCGTACTGTGCAGGCTGCTTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTAATGGTTGGAAATTCTAGTTCCAGCAACTGCTCTGCAGGGAAGCTGTTTACTTGGGGAGATGGAGACAAAGGTAGACTTGGGCATGGTGACAAGGAATCTAAACTTGTTCCAACCTGTGTTTTAGCCCTTATCGAACCTAACTTTTGTCAAGTTGCTTGTGGGCATAGTATGACTGTTGCACTTTCTAGAGCAGGTCATGTCTATACCATGGGCAGTTGTGTCTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAACCCGCATTGAAGGGAAGCTTTCAAAGAGTTTTGTGGAGGAGATAGCCTGTGGTGCTTATCACGTTGCAGTTTTGACTTCGAGGACTGAAGTTTACACTTGGGGGAAAGGTTCAAATGGTCGTTTAGGCCATGGCGATACTGATGATAGAAACTCCCCAACATTAGTGGAAGCTCTGAAAGACAAACAAGTCAAAAGCATTGCTTGTGGTACGAATTTCACTGCTGCCATATGCTTGCATAAGTGGGTATCTGGTGTTGACCAATCCATGTGTTCTGGCTGCCGTGTGCCATTCAATTTCAAAAGGAAGCGCCATAATTGTTACAATTGTGGACTCGTTTTTTGTCATTCATGCAGCAGTAAGAAGTCTGTTAAGGCCTCAATGTCACCGAATCCCAACAAACCTTATCGTGTCTGTGATAACTGTTTCAACAAAATAAGGAAAGCTACAGAAACTGATGGTTCATCTCACTCTTCTATTAGCAGAAGAGGAAGTATTAATCAAGGGTCACTTGAGTCTATTGGTAAGGATGATAAATTGGATTCCAGatctcaaaatcaattttctagGTTCTCTACAATGGAGTCCTTCAAACAAGTAGACAGAAGatcttcaaagaaaaataaaaaattggaattCAATAGCAGCCGTGTCTCACCTGTTCCTAATGGAGGTTCACAATGGGGAGCAATGCATATTTCTAAATCTTCTAATCCTGTTTTTGGATCATCAAAGAAGTTTTTTTCAGCTTCAGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCAAGGCGTCCTAGTCCACCACGGTCAACTACTCCAACCCCAACGCTGGGAGGACTGACAACCCCAAAGATAGTTGTGGATGATACGAAGAGGACTAACGAAAACCTCAATCAGGAGGTTGTTAAATTAAGATCACAGGTGGAAAACTTGACTCGGAAATCCCAGCTTCAAGAAGATGAGTTGGAAAAAACAACTAAACAGCTAAAAGAAGCAATAGCAATTGCCAGCGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTGATCAAGTCGCTTACTGCCCAGTTGAAGGACATGGCTGAGAGGCTGCCCATAGGAGCAGCTAGGAATGTCAGATCACCCTCTAACTCCATTTCCAATGACTTAAGCATTGCTTCCATCGATCGACTGAATATTCAAGCAACAAGCCCAGAATCAGACATTACTGGATCATATAACCAGTTATTTTCAAATGGATCAAGCACTGTCACAGACCGTTCTGTAGGCCACTGTAAACATAGTCTATCAGATGCAGCTAGCAGAAATGGGAGCAAAACAAAGGATAACGAATCCCGTAACGAGACCGAATGGGTAGAGCAAGATGAACCTGGTGTATATATTACTCTGACTTCCCTATCAGGCGGGGCTATAGATCTTAAGAGGGTTCGATTCAGTCGCAAGCGGTTTAGTGAGAAACAAGCAGAACATTGGTGGGCTGAGAATCGGATAAGGGTATATGAAAAGTACAATGTGCGCATGATTGACAAATCGACCATTGGTATTGGGAGTGTGGACCTGGCTCATTGA 3333 0.4323 MMSRSDTIMMTTTSSTSDLNRAGTVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKRLKLTNVSRIISGQRTPIFQRYPRPAKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGFPSEINSPRTYTRRSSPLHSPFDSNESLQKDSGDHLGLHSPYESPPDNGLDKAFSDATYYPIPPKGFFPPDSASGSVHSVSSGGSDSVHGHMKAMPMDAFRVSLSSAVSSSSQGSARDDGDALGDVFIWGEGAGDGVLGGGVHRVGSCFDVKMDSLLPKALESAVVLDVQNIACGEQHVALVTKQGEIFSWGEESGGRLGHGVDSDVPHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSSGKLFTFGDGTFGVLGHGDRKSVSLPREIESLKGLRTVQAACGVWHTAAVVEVMVGNSSSSNCSAGKLFTWGDGDKGRLGHGDKESKLVPTCVLALIEPNFCQVACGHSMTVALSRAGHVYTMGSCVYGQLGNPQADGKLPTRIEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGSNGRLGHGDTDDRNSPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRVPFNFKRKRHNCYNCGLVFCHSCSSKKSVKASMSPNPNKPYRVCDNCFNKIRKATETDGSSHSSISRRGSINQGSLESIGKDDKLDSRSQNQFSRFSTMESFKQVDRRSSKKNKKLEFNSSRVSPVPNGGSQWGAMHISKSSNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTTPKIVVDDTKRTNENLNQEVVKLRSQVENLTRKSQLQEDELEKTTKQLKEAIAIASEETAKCKAAKEVIKSLTAQLKDMAERLPIGAARNVRSPSNSISNDLSIASIDRLNIQATSPESDITGSYNQLFSNGSSTVTDRSVGHCKHSLSDAASRNGSKTKDNESRNETEWVEQDEPGVYITLTSLSGGAIDLKRVRFSRKRFSEKQAEHWWAENRIRVYEKYNVRMIDKSTIGIGSVDLAH 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 276 337 IPR000408 -
Tsu03g01516 1110 Gene3D - 505 676 IPR009091 -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 737 756 - -
Tsu03g01516 1110 Gene3D - 225 399 IPR009091 -
Tsu03g01516 1110 Gene3D - 400 498 IPR009091 -
Tsu03g01516 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 431 441 IPR000408 -
Tsu03g01516 1110 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 669 731 IPR017455 -
Tsu03g01516 1110 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 483 493 IPR000408 -
Tsu03g01516 1110 SUPERFAMILY FYVE/PHD zinc finger 665 736 IPR011011 -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 613 664 IPR000408 -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 780 797 - -
Tsu03g01516 1110 Pfam Transcription factor BRX N-terminal domain 926 956 IPR027988 -
Tsu03g01516 1110 CDD FYVE_like_SF 674 727 - -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 1025 1039 - -
Tsu03g01516 1110 Pfam Unstructured region between BRX_N and BRX domain 963 1030 - -
Tsu03g01516 1110 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 29 1096 - -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 445 496 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 608 629 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 340 356 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 550 568 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 390 406 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 447 461 IPR000408 -
Tsu03g01516 1110 PRINTS Chromosome condensation regulator RCC1 signature 431 447 IPR000408 -
Tsu03g01516 1110 CDD PH_PLC_plant-like 27 137 - -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 151 179 - -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 1009 1039 - -
Tsu03g01516 1110 ProSiteProfiles BRX domain profile. 1037 1092 IPR013591 -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 734 811 - -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 509 560 IPR000408 -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 338 389 IPR000408 -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 444 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 338 386 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 509 557 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 389 441 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 444 493 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 561 609 IPR000408 -
Tsu03g01516 1110 Pfam Regulator of chromosome condensation (RCC1) repeat 614 661 IPR000408 -
Tsu03g01516 1110 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 561 612 IPR000408 -
Tsu03g01516 1110 SUPERFAMILY PH domain-like 28 136 - -
Tsu03g01516 1110 SMART fyve_4 663 732 IPR000306 GO:0046872
Tsu03g01516 1110 Coils Coil 875 951 - -
Tsu03g01516 1110 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 29 1096 - -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 843 870 - -
Tsu03g01516 1110 Pfam FYVE zinc finger 665 731 IPR000306 GO:0046872
Tsu03g01516 1110 Gene3D - 27 145 IPR011993 -
Tsu03g01516 1110 MobiDBLite consensus disorder prediction 147 206 - -
Tsu03g01516 1110 SUPERFAMILY RCC1/BLIP-II 275 666 IPR009091 -
Tsu03g01516 1110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 677 738 IPR013083 -
Tsu03g01516 1110 Pfam Pleckstrin homology domain 30 136 IPR001849 -
Tsu03g01516 1110 Pfam Transcription factor regulating root and shoot growth via Pin3 1036 1091 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01516 Tsu-Chr3 14793344 14804294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01516 935 1101 Major Intrinsic Protein MIP AT1G31880 31.088 3.53e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01516 - - gmx:100791947 1908.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01516 03 14793344 14804294 Tsu03g01516 03 14793344 14804294 ECH
Tsu03g01516 03 14793344 14804294 Tsu05g03653 05 47913913 47922279 PCT