LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g01509	ATGATATCTCAGTCTCAATCATGTGCTTTAATTGCAACATTAATATTTGTTCTTGCAACACAAATCATTGTAGGAGTAAATTCCTTTCCAGAATCTGATAAGATAAGAAGTTTACCTCAACAGCCAAAAGTTGGATTCCAGCAATATGCTGGTTACATTACAGTTGATGAAGTTCAGAAAAGATCTTTGTTTTACTATTTTGTTGAAGCTGAAGTTGAACCAGCTTCCAAGCCAGTAGTCCTTTGGTTAAATGGAGGACCTGGTTGTTCTTCTGTTGGAGCTGGAGCTTTTGTGGAGCATGGTCCATTCAAACCAACTGAAAATGgtcttattaaaaataattacagtTGGAACAAAGTGGCAAATATGCTCTACTTGGAATCGCCTGCTGGTGTTGGTTTCTCCTACTCTGCCAATAAATCATTCTATGACTTTGTCAATGATGAAATGACAGCAAGGGATAATCTTGTCTTTCTACAACATTGGTTCACTAAATTCCAAGAGTACAAAAACAATGCTTTCTTTATCACAGGGGAGAGTTATGCAGGTCACTATGTACCACAACTTGCACAACTCATTGTTCAAACCAAAAGCAAATTCAATCTCAAGGGGATAGCAATAGGGAATCCTCTTCTTGAATTTAACACAGATTTCAACTCAAGAGCTGAGTTTTTATGGTCTCATGGACTAATATCAGATTCAACTTTCCAAACCTTCACAAAAATATGCAACTATTCCCAAATTagaagagagtatcaaagtgGCACAGCTACTATTGTTTGTGCAAGAGTGAATAGGCTAGTATCAATGGAGATTGGTAGATATATCGATTCATATGATGTTACACTTGATGTATGTCTACCATCAGAAAAACAACAGGCGTATATACTGACTCAATTGCAAGAGGGAGAGAAGATAGATGTTTGTGAGGAGGATGAAACAATTTCATACTTGAATAGGAAAGATGTGCAGTTAGCTCTCCATGCTAAGCTTGTAGGGGTCCCTGCCTGGTCAACTTGTAGTGGTGTTCTGAAATATGACATGCAAAATCTAGAGATTCCAACCATATCAATTCTAGGAAAACTTGTCAAATCAGGTTTAAGAGTTCTAGTATACAGTGGAGATCAAGATTCAGTCATACCATTACTTGGAACAAGATCTTTAGTAAATGGATTAGCCAAGGACTTTGGGTTGAACACAACAAATTCCTATAGAGCTTGGTTTAATGAAAGACAGGTAGCTGGATGGACTCAGATATATGGTGATGGTATCTTATCATTTGCAACAATAAGAGGAGCATCTCATGAGGCACCATTTTCACAACCTGGGAGATCATTGGGTCTACTAAAGGCATTTTTGGAAGGAAAGCCACTTCCAACTATTCTTTGA	1389	0.3672	MISQSQSCALIATLIFVLATQIIVGVNSFPESDKIRSLPQQPKVGFQQYAGYITVDEVQKRSLFYYFVEAEVEPASKPVVLWLNGGPGCSSVGAGAFVEHGPFKPTENGLIKNNYSWNKVANMLYLESPAGVGFSYSANKSFYDFVNDEMTARDNLVFLQHWFTKFQEYKNNAFFITGESYAGHYVPQLAQLIVQTKSKFNLKGIAIGNPLLEFNTDFNSRAEFLWSHGLISDSTFQTFTKICNYSQIRREYQSGTATIVCARVNRLVSMEIGRYIDSYDVTLDVCLPSEKQQAYILTQLQEGEKIDVCEEDETISYLNRKDVQLALHAKLVGVPAWSTCSGVLKYDMQNLEIPTISILGKLVKSGLRVLVYSGDQDSVIPLLGTRSLVNGLAKDFGLNTTNSYRAWFNERQVAGWTQIYGDGILSFATIRGASHEAPFSQPGRSLGLLKAFLEGKPLPTIL	462

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g01509	462	SUPERFAMILY	alpha/beta-Hydrolases	26	460	IPR029058	-
	Tsu03g01509	462	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	20	460	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	PANTHER	CARBOXYPEPTIDASE	20	460	-	-
	Tsu03g01509	462	Gene3D	-	356	455	-	-
	Tsu03g01509	462	Gene3D	alpha/beta hydrolase	30	287	IPR029058	-
	Tsu03g01509	462	Pfam	Serine carboxypeptidase	42	455	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	Gene3D	-	309	344	-	-
	Tsu03g01509	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	425	438	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	162	187	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	126	136	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	PRINTS	Carboxypeptidase C serine protease (S10) family signature	113	125	IPR001563	GO:0004185\|GO:0006508
	Tsu03g01509	462	ProSitePatterns	Serine carboxypeptidases, serine active site.	176	183	IPR018202	GO:0004185
	Tsu03g01509	462	ProSitePatterns	Serine carboxypeptidases, histidine active site.	425	442	IPR033124	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g01509	Tsu-Chr3	14731347	14736300	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g01509	317	458	Calmodulin-binding Proteins	AT2G22960	28.169	1.72e-13	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g01509	K16297		-	gmx:100805028	762.681