Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01503 ATGATGCTCTCAAAAGGTACAATCGGAATTTTCAATAAAGTAACAGAACTCTCGATTTTGTGCAAGGCAAAAACTGCATTCATTGTCACATCTCCCAACAATGAGTTATATACATATGACTATCCTAATTGTGATGTTGTCATTCAACAATTTTTGACCAGAAAAGAGACCATTGAAAACAATGAGAAAAAGAAATATGATGTGGAAATTTGTAAGAAATCCAAGCCAGAACTGAGGTATTCCCTCTTTATCCATTCACAACCTCAAGtTCTGCTAAGAGCAGAGCTCAGTGGCAGCACAGCTCTTCCTTCTGCCATATTTCACTCAAATTCTCTTAGgttgaaaaaactaaaaattgcTTGA 363 0.3444 MMLSKGTIGIFNKVTELSILCKAKTAFIVTSPNNELYTYDYPNCDVVIQQFLTRKETIENNEKKKYDVEICKKSKPELRYSLFIHSQPQVLLRAELSGSTALPSAIFHSNSLRLKKLKIA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01503 120 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 7 39 IPR002100 GO:0003677|GO:0046983
Tsu03g01503 120 PANTHER MADS BOX PROTEIN 4 71 - -
Tsu03g01503 120 Gene3D - 3 76 IPR036879 GO:0003677|GO:0046983
Tsu03g01503 120 ProSiteProfiles MADS-box domain profile. 1 43 IPR002100 GO:0003677|GO:0046983
Tsu03g01503 120 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 4 71 - -
Tsu03g01503 120 SUPERFAMILY SRF-like 4 54 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01503 Tsu-Chr3 14682458 14686315 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01503 1 51 Type I MADS-box Gene Family AT3G66656 39.216 1.90e-09 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01503 SRF-TF 7.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01503 - K06618 cam:101507050 65.4698