Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01498 ATGAAACATGGTTTTGTATTTGACAAAACTTCAAACTCTAGTTTGAATAGTTGGAACATTTCTAACTACATGTCACTTTGTAGTACTTGGTATGGAATTCAATGTGACCAAAAAAACATGTCTATAGTTTCACTTGATATTTCAAAGTTAAACATTTCAAGTTCATTTTCATCTCATATCACAAAACTTTCCACACTTGTGAATGTTTCAATTCAAGAAAATAGCTTCTATGGTGAGTTTCCACCTGAAATTCATAAGCTACAAAGCTTGAAATACcttaacatatcaaataatatgTTTAGTGGAAACTTGAGTTGGGAATTCAACAATTTGAAAGAGCTTGAAGTTTTGGATATTTACAACAATGGTTTCAATGGTTCACTTCCAAAGAATGTTACTCAAATGTTGAAGCTTAAGCATTTGAATTTTGGAGGGAATTATTTTAATGGAAAAATTCCTACAAGTTATGGAGAAATGAAAGAGCTTAATTTTTTGTCTCTTGCTGGAAATgatttgagtggtgagataccTAGTGAGCTTGGAAATTTGACTAGTTTGGAATATCTTTATTTAGgttatttcaatcaatttgatgGTGGAATTCCAAATGAGTTTGGTAAGTTGATTAATTTGGTTCATTTAGATTTAGCTAATTGTTTCTTGAAAGGTTCAATTCCAAATGAGTTAGGTAAACTTTACAAGTTAGATACACTTTTCttgcaaaaaaatcaattaactGGTTCGATTCCACCCGAGTTAGGTAACTTGAGTAGATTAACTGCTCTTGATTTATCGCTCAATAACCTAACAGGTGGAATCCCGAACGAATTCTCGAACCTTCAAGAACTTTCTCTTTTGAACCTTTTTATCAACAAGTTTCACGGTGAAATACCTGATTTTATTTCTGAGCTTCCTAAATTGGAAGTACTTAAGCTTTGGAGGAATAACTTCACTGGAGTTATTCCTTCAAAATTAGGTCAGAATAGAAGATTAACCGAACTTGATTTGTCGACAAATAAACTCACTGGAATATTGCCAAAATCACTTTGTCTTGGTAAGAGATTAAAAATCTTGATCTTGCTTAACAACTTTTTCTTTGGTTCTTTGCCTAATGATCTTGGTCAGTGCTACACACTTCAAAGAGTTAGAATTGGTCAAAACTACTTAACTGGTTCAATTCCACATGGTTTTCTTTATTTGCCAAATCTATCTCTTTTGGAGCTACAAAACAATTATCTCAATGGTGTGATTCCACAACAAAAAGCCAAAAATAACTCAACTTCCAAACTAGAACAATTTAATCTATCAAACAATAGATTATCAGGTTCTTTGCCAACTTCAATTGGAAATTTTCCAAATTTGCAAATTCTTCAGCTTAGTGGAAACAGATTCTCAGGTGAAATTCCATTAGATATAGGAAAACTCAAAAAAGTGCTTAAGTTAGATATAAGTGGCAACAAATTTTCAGGTACTATACCTATTGAGATAGGTAAATGTACCTTACTAACTTATTTAGATTTAAGCCAAAACAAATTATCAGGTCCTATTCCAATTCAACTTGCTCAAATTCATATACTAAACCATCTGAATGTGTCATGGAATCACTTAAACCAAAGTCTTCCTAAGGAGTTAGGTGTCTTAAAAGGCTTAACTTCAGCTGATTTCTCTCATAATAACTTCTCCGGTTCGATACCAGAAGGAGGACAATTGTCAACTTTTAAGTCAACTTGTTTTGAAGGTAATTCTCAACTATGTGGTTATGAGTCCAATCCATGCAAAATCTCATCGACGAATGTATTGGaatcacaacaaaaaaacagTTCAAGAAATGGATTTCGTGGAAAGTTTAAGCTCGTTTTCGCGTTGGCGTTATTGTTATGTTCATTGGTTTTTGCTATTTTTGCTATCATCAAAAGTAGAAAATCGCGGAGGAGGAGTCACTCGAATTCGTGGAAGTTAACAGCATTTCAAAAAATGGAATATGGAAGCGAAGAAATTGTTAGTTGCATAAAGGAAAGTAATGTGATAGGAAAAGGTGGAGCAGGTGTTGTGTACAAAGGAACAATGCCAAATGGTGATGAAATCGCGGTGAAGAAATTGTTAGGAATCAACAATGGTTCTTCTTCTCATCAAGATAATGGTTTTTCAGCTGAGATTAAGACATTAGGTAGAATAAGACATAGATATATTGTTAGGTTGGTTGCATTTTGttcaaacaaagaaacaaatttgCTTGTTTATGATTATATGGAAAATGGTAGTCTTGGTGAAGTTTTGCATGGAAAAAGAGGTGAGTTTTTGAAATGGGATGTTAGGTTGAAAATTGCTGTTGAAGCTGCTAAAGGACTTTGTTATTTGCATCATGATTGTTCACCTTTGATTATTCATAGAGATGTTAagtcaaataatattttgttgaaTTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCTAAGTTTATGCAAGATAATGGAAATTCTGAATGCATGTCTTCTATTGCTGGTTCTTATGGATATATTGCTCCAGAATATGCATACACATTGAAAGTTGATGAAAAAAGTGATGTATATAGTTTTGGAGTGGTGCTACTAGAGCTCATAACAGGAAAAAGGCCAGTTGGGGATTTTGAGGAAGAAGGATTAGACATTGTTCAATGGACAAAAATGAAAACTAATTGGAACAAAGATATGGTGATTAAGATCCTTGATGAGAGACTACCTCAAATTCCTTTAGATGAAGCAaaacaaatgttttttgttgCAATGTTATGTGTTCATGAACATAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTTGCACAAGCCAAGTaa 2847 0.3193 MKHGFVFDKTSNSSLNSWNISNYMSLCSTWYGIQCDQKNMSIVSLDISKLNISSSFSSHITKLSTLVNVSIQENSFYGEFPPEIHKLQSLKYLNISNNMFSGNLSWEFNNLKELEVLDIYNNGFNGSLPKNVTQMLKLKHLNFGGNYFNGKIPTSYGEMKELNFLSLAGNDLSGEIPSELGNLTSLEYLYLGYFNQFDGGIPNEFGKLINLVHLDLANCFLKGSIPNELGKLYKLDTLFLQKNQLTGSIPPELGNLSRLTALDLSLNNLTGGIPNEFSNLQELSLLNLFINKFHGEIPDFISELPKLEVLKLWRNNFTGVIPSKLGQNRRLTELDLSTNKLTGILPKSLCLGKRLKILILLNNFFFGSLPNDLGQCYTLQRVRIGQNYLTGSIPHGFLYLPNLSLLELQNNYLNGVIPQQKAKNNSTSKLEQFNLSNNRLSGSLPTSIGNFPNLQILQLSGNRFSGEIPLDIGKLKKVLKLDISGNKFSGTIPIEIGKCTLLTYLDLSQNKLSGPIPIQLAQIHILNHLNVSWNHLNQSLPKELGVLKGLTSADFSHNNFSGSIPEGGQLSTFKSTCFEGNSQLCGYESNPCKISSTNVLESQQKNSSRNGFRGKFKLVFALALLLCSLVFAIFAIIKSRKSRRRSHSNSWKLTAFQKMEYGSEEIVSCIKESNVIGKGGAGVVYKGTMPNGDEIAVKKLLGINNGSSSHQDNGFSAEIKTLGRIRHRYIVRLVAFCSNKETNLLVYDYMENGSLGEVLHGKRGEFLKWDVRLKIAVEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFMQDNGNSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELITGKRPVGDFEEEGLDIVQWTKMKTNWNKDMVIKILDERLPQIPLDEAKQMFFVAMLCVHEHSVERPTMREVVEMLAQAK 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01498 948 ProSiteProfiles Protein kinase domain profile. 670 948 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01498 948 SUPERFAMILY L domain-like 11 191 - -
Tsu03g01498 948 Gene3D Ribonuclease Inhibitor 332 596 IPR032675 -
Tsu03g01498 948 SMART serkin_6 670 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01498 948 SUPERFAMILY Protein kinase-like (PK-like) 663 944 IPR011009 -
Tsu03g01498 948 SMART LRR_typ_2 111 135 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 232 256 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 329 351 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 87 110 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 304 328 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 451 475 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 523 547 IPR003591 -
Tsu03g01498 948 SMART LRR_typ_2 159 183 IPR003591 -
Tsu03g01498 948 Gene3D Ribonuclease Inhibitor 252 331 IPR032675 -
Tsu03g01498 948 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE BAM3 9 948 - -
Tsu03g01498 948 Pfam Leucine Rich repeat 498 514 IPR001611 GO:0005515
Tsu03g01498 948 Pfam Leucine Rich repeat 327 343 IPR001611 GO:0005515
Tsu03g01498 948 ProSiteProfiles Leucine-rich repeat profile. 330 351 IPR001611 GO:0005515
Tsu03g01498 948 ProSitePatterns Serine/Threonine protein kinases active-site signature. 794 806 IPR008271 GO:0004672|GO:0006468
Tsu03g01498 948 PANTHER UNNAMED PRODUCT 9 948 - -
Tsu03g01498 948 SUPERFAMILY L domain-like 330 589 - -
Tsu03g01498 948 Gene3D Transferase(Phosphotransferase) domain 1 750 948 - -
Tsu03g01498 948 Gene3D Ribonuclease Inhibitor 1 152 IPR032675 -
Tsu03g01498 948 Pfam Protein tyrosine and serine/threonine kinase 672 944 IPR001245 GO:0004672|GO:0006468
Tsu03g01498 948 SUPERFAMILY L domain-like 161 417 - -
Tsu03g01498 948 Pfam Leucine Rich Repeat 210 232 IPR001611 GO:0005515
Tsu03g01498 948 Pfam Leucine Rich Repeat 258 280 IPR001611 GO:0005515
Tsu03g01498 948 Gene3D Ribonuclease Inhibitor 153 251 IPR032675 -
Tsu03g01498 948 Gene3D Phosphorylase Kinase; domain 1 635 749 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01498 Tsu-Chr3 14665829 14670813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01498 12 946 Receptor kinase-like Gene Family AT5G65700 56.624 0.0 1063
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu03g01498 PK_Tyr_Ser-Thr 3.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01498 - - gmx:100803075 1436.4