Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01496 ATGACAACCACGATTCTCCGAAGATCTTCTTCCATATTCTCACGCCGTTTCTTCGCCCCCATTACTTCCGTCGAGCTACTTCCAATCCGCCACCGCAGTCTCCCCTTGTCTTCCGCCGTCTACGGCAAAGGAGAGAGACTATTTCACGCGAAATCTGGACCGTTGAACTTTCACTCGTCGCTGGTTTCTCGTGTTGCGCGTGGTGCGCAACTTGCTGTGGATTACGATGACGCGCATGACGATGAAGGTTTCAGTGGTAATGGTGATGAAGGACTTGAGATCGCGAAGCTTGGAATTTCTAAGGAGATCGTTAATGCTCTTGCAAAGAAAGGGATCGCGAAACTCTTCCCCATTCAGAGAGCTGTACTGGAACCTGCGATGCAAGGGAGGGATATGATTGCTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATACCCATTTTGGATAAGATTATTAAGTTTAATGCTAAAAATGGGAAAAGAAGGGATCCTATGGCTCTGGTGTTGGCACCGACCAGAGAACTTGCACGGCAGGTTGAAAAGGAATTCAACGAGGCTGCACCTAACTTGGAAACGGTCTGCCTTTATGGGGGTATGCCTATTCAGCAACAAATCCATCAACTTGGTGGTGGCGTGGATATTGTAGTTGGTACACCTGGACGTGTTATTGATCTTCTCAAAAGGGGTTCACTGAAATTGAAGGATGTTAGTTATGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTAGGATTTCAAGAAGCGGTGGAGATTATCTTGCAGAAGTTGCCTTCAAAGCGTCAAACTCTTATGTTCTCGGCGACAATGCCTTCTTGGATAAAGAATATTTCACGCAATTACCTAACCAAACCCTTAACAATTGATCTTGTTGGAGATTCCGATCAGAAGTTGGCAGATGGAATTTCATTGTACTCTATTGCATCTAATGCCTATTCTAAAGCAGGAATTCTTGCACCTCTTATAAAAGAACATGCTAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGATGCTGATCGACTATCACATATAATGGCAAAAACCCTTAAATGTGAGGCCTTGCATGGAGATATTTCACAAACTCAGAGAGAAAGAACTCTCACTGGCTTTAGAAACAGTTATTTCAATGTTTTAGTGGCAACTGATGTTGCTTCTCGTGGGCTTGATATACCAAATGTTGATCTTGTAATCCATTATGAACTTCCAAATAATTCAGAGATATTTGTTCATCGATCTGGACGAACAGGACGCGCTGGGAAGAAAGGAACTGCTATTGTTGTCCACACAGAAAATCAATCCAGGGCTGTAAAGACAATAGAGCGAGATGTTGGATGCACATTCAAAGAGtTACCTAAGATTGCTGTTGAAAGTGGATCAGCAGACATGTTTGGCAGCATGAGTGGTGATCGATACGGCTCATCGGGAGGTAGGGATCGTCGATCAGGCGGTACAGGTTTTGGTGGTAGTTCTGGATCTGGCCGAACCGGCTATGGTAAATCCAGTGGTTTTGGTGGGTCTGGTTCAAGTCAGTCAAGAGGGGGGTTTGGGGAGTTTTCTGGTAAATCAGATAAATACGGTGGTGGAGGATTTAACAGTTCAGGTCGTTCCAGTGGCTTTGGAAATTTTGGCTCAGTTAAAATAGAGGAAGCCCATTTTAACTCCTGGCATCCTTCCTAA 1713 0.4431 MTTTILRRSSSIFSRRFFAPITSVELLPIRHRSLPLSSAVYGKGERLFHAKSGPLNFHSSLVSRVARGAQLAVDYDDAHDDEGFSGNGDEGLEIAKLGISKEIVNALAKKGIAKLFPIQRAVLEPAMQGRDMIARARTGTGKTLAFGIPILDKIIKFNAKNGKRRDPMALVLAPTRELARQVEKEFNEAAPNLETVCLYGGMPIQQQIHQLGGGVDIVVGTPGRVIDLLKRGSLKLKDVSYVVLDEADQMLQVGFQEAVEIILQKLPSKRQTLMFSATMPSWIKNISRNYLTKPLTIDLVGDSDQKLADGISLYSIASNAYSKAGILAPLIKEHAKGGKCIVFTQTKRDADRLSHIMAKTLKCEALHGDISQTQRERTLTGFRNSYFNVLVATDVASRGLDIPNVDLVIHYELPNNSEIFVHRSGRTGRAGKKGTAIVVHTENQSRAVKTIERDVGCTFKELPKIAVESGSADMFGSMSGDRYGSSGGRDRRSGGTGFGGSSGSGRTGYGKSSGFGGSGSSQSRGGFGEFSGKSDKYGGGGFNSSGRSSGFGNFGSVKIEEAHFNSWHPS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01496 570 Gene3D - 93 301 IPR027417 -
Tsu03g01496 570 Gene3D - 315 475 IPR027417 -
Tsu03g01496 570 SMART ultradead3 111 314 IPR014001 -
Tsu03g01496 570 MobiDBLite consensus disorder prediction 477 532 - -
Tsu03g01496 570 CDD DEADc 103 298 - -
Tsu03g01496 570 PANTHER RNA HELICASE 3 557 - -
Tsu03g01496 570 MobiDBLite consensus disorder prediction 497 528 - -
Tsu03g01496 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 123 297 IPR014001 -
Tsu03g01496 570 Pfam DEAD/DEAH box helicase 116 285 IPR011545 GO:0003676|GO:0005524
Tsu03g01496 570 Pfam Helicase conserved C-terminal domain 325 431 IPR001650 -
Tsu03g01496 570 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE-LIKE PROTEIN 3 557 - -
Tsu03g01496 570 CDD SF2_C_DEAD 311 438 - -
Tsu03g01496 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 451 IPR027417 -
Tsu03g01496 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 470 IPR001650 -
Tsu03g01496 570 SMART helicmild6 351 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01496 Tsu-Chr3 14645736 14651140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01496 78 463 Eukaryotic Initiation Factors Gene Family AT3G19760 32.995 4.82e-67 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01496 - - gmx:100802553 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01496 03 14645736 14651140 Tsu05g03664 05 48031975 48037101 PCT