Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01487 ATGAACAACACTTTTCCTGAATGGAATTTTGGGAATGATACTTTTGTTACTAATCAAAAGAAGCAACCTATGGGGCTAGACCATGAACTTGTGGAGCTTCTATGGCAAAATGGACAAGTAGTATTACATAGCCAAACAAATAAGAAACCACTTTTGAATACAAATTCAAACACTTCAAGACAAGTTCATAAGAATCTTCAATCAACAACAGTAAGTAACTTGATTCAAGCCGATGAAACGGTTTCATGGATCCAACAATACCCTCTTGAGGATCCACTTGAACAAGAATTATGTTCAAATCTATTAAATGAACTTCCACCTTGTGATGTTGAGTCTTACAATTCACAAACAACGAATACAAAGCCACCTTTTGTTGAGGAATTTGCGCGAATTCCTATGCCAGCTCCAAGATTTAATGATCATGTTTCTGATTCATCGCAAATAAACAATGATTTGTGTGGATCAAATAAGGTTGTAAACTTTTCTCACTTTTCAAGACTACCTAATGTTTCTTTAGCATCTTCTAACGGCGATGCAAAGTTTAGGGACAAAGTTACTGGTAATTTGTCGCAATGTGATATTAGAGAGTGTTCGACAATGACAGTTGGTTCGAGTTATTGTGGAAGCAATCTTGTCCAACAAGATCCGGATGTAAGCAGGGTATCAAGCAACGGTGTTTggactactactactactactactttaTCTGCCGAGCAGGAAATAATCAAAGATGATGTTCATAAAACAGTTCCTCGGCATGAGAAAGGGAAATCGGAGATGCTTGAACCGGTGGTTACTTCATCTTCTGGTGGTTCGGGCAGTAGCCTTGGAAAAACTTGTTCCTTATCTACAAGAAGCCATGGGgaaaagagaaaagagatgGACGTTGAAGATTCAGTCGAACAAAGTGAGGACACGGAATTTAAACCAGCGGTGCGAAAGAAGACATCTCAGAGGTCAGGGTCAGCTCGAAGGAACCGGGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGACGAAGAGATAGGATTAATGAGAAGATGAAAGCGTTGCAACAACTCATACCTCACAGTAGTAAGACAGACAAAGCATCAATGTTAGAAGAAGCAATTGATTACTTGAAATCACTTCAGTTACAACTTCAGGTAATGTGGATGGGATCTGGCATGCAACCAATGATGCTACCAGGATTTCAACAATATATGTCACAAATGAGTATGGGAATGACTACACCTTCATTTCCTCCGCTTCAAAATCCGATGCAAGTTCCGAGAATGCCTCTTAATCCATCTGTATCTTCATCTCAGACACCAAATCAGACATTAATGTGCCAAAATCCTCTTTTAGGTGCCTTTAATTATCAAAATCAGATACAAAATCCAGCTCTTTCGGAGCAATACGCCCGTTACATGGGCTATCATCTTATGCAAAATGCTTCTCAGCCAATGAATATGTACAGATATGGTCCCCAAACTGTACAAAATAGTCAAACAATGATTCCAAGTAGTGGACCAATGAATGGAGCTGAAAACATTAATGATGCTGTGAGTGGCAAAATGGGTTAA 1563 0.382 MNNTFPEWNFGNDTFVTNQKKQPMGLDHELVELLWQNGQVVLHSQTNKKPLLNTNSNTSRQVHKNLQSTTVSNLIQADETVSWIQQYPLEDPLEQELCSNLLNELPPCDVESYNSQTTNTKPPFVEEFARIPMPAPRFNDHVSDSSQINNDLCGSNKVVNFSHFSRLPNVSLASSNGDAKFRDKVTGNLSQCDIRECSTMTVGSSYCGSNLVQQDPDVSRVSSNGVWTTTTTTTLSAEQEIIKDDVHKTVPRHEKGKSEMLEPVVTSSSGGSGSSLGKTCSLSTRSHGEKRKEMDVEDSVEQSEDTEFKPAVRKKTSQRSGSARRNRAAEVHNLSERRRRDRINEKMKALQQLIPHSSKTDKASMLEEAIDYLKSLQLQLQVMWMGSGMQPMMLPGFQQYMSQMSMGMTTPSFPPLQNPMQVPRMPLNPSVSSSQTPNQTLMCQNPLLGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQTVQNSQTMIPSSGPMNGAENINDAVSGKMG 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01487 520 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 503 IPR031066 -
Tsu03g01487 520 MobiDBLite consensus disorder prediction 284 314 - -
Tsu03g01487 520 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Tsu03g01487 520 Pfam Helix-loop-helix DNA-binding domain 331 377 IPR011598 GO:0046983
Tsu03g01487 520 MobiDBLite consensus disorder prediction 262 283 - -
Tsu03g01487 520 MobiDBLite consensus disorder prediction 252 331 - -
Tsu03g01487 520 Gene3D - 322 383 IPR036638 GO:0046983
Tsu03g01487 520 CDD bHLH_AtPIF_like 327 389 - -
Tsu03g01487 520 MobiDBLite consensus disorder prediction 498 520 - -
Tsu03g01487 520 Coils Coil 333 353 - -
Tsu03g01487 520 PANTHER TRANSCRIPTION FACTOR PIF5 1 503 - -
Tsu03g01487 520 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 325 393 IPR036638 GO:0046983
Tsu03g01487 520 SMART finulus 333 382 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01487 Tsu-Chr3 14563700 14566437 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01487 8 504 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.283 1.36e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu03g01487 HLH 1.6e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01487 K16189 - gmx:100800166 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01487 03 14563700 14566437 Tsu03g01487 03 14563700 14566437 ECH