Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01485 ATGGGAAACAAGGTGAAACTTGCATACATAACACATAACTCAAAGAGAAAGGCAGCATTCAGAAAGAGGAAAATTGgTATAATGAAGATGCTTGATGAAATCACCACCCTGTGTGGAATCGAAGCATGTGCAATAATCTATGACAATAACAATCCTCAACCAGTGGTTTGGCCATCATCGGAATCAGAAGCCAAAAATGTGCTGTCGAAGTTTGTGAGTTTGCCTGAACCGGATCAAAGCAAAAAGATGATGGACCAAGAGGATTTCTTGTGGAAAAGGGTAGAGAAAGCCTTCGAGAAATTGAAGAAACTAAGAGAGGAAACTCGAAAAAATGTTATGGCCATAATCATGAATCATTACATTAATACAAAAGAATTTAATGGCAATTCAATGAGCAACTATGATCTTAATGATATGTCATGTTTTGTTGATGAGAATCTGAAAGAAATCTACCAAAAGATGGAAGGAATGAAAATTGAATCCCAAGAGCATGGTGGAAATGAAGCTGAAGTAATGAATGGAACAAAGAAACAATAG 537 0.3631 MGNKVKLAYITHNSKRKAAFRKRKIGIMKMLDEITTLCGIEACAIIYDNNNPQPVVWPSSESEAKNVLSKFVSLPEPDQSKKMMDQEDFLWKRVEKAFEKLKKLREETRKNVMAIIMNHYINTKEFNGNSMSNYDLNDMSCFVDENLKEIYQKMEGMKIESQEHGGNEAEVMNGTKKQ 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01485 178 PANTHER MADS BOX PROTEIN 3 162 - -
Tsu03g01485 178 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 3 162 - -
Tsu03g01485 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 9 51 IPR002100 GO:0003677|GO:0046983
Tsu03g01485 178 SMART madsneu2 1 59 IPR002100 GO:0003677|GO:0046983
Tsu03g01485 178 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Tsu03g01485 178 CDD MADS_SRF_like 1 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu03g01485 178 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Tsu03g01485 178 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01485 Tsu-Chr3 14552974 14553812 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01485 4 165 Type I MADS-box Gene Family AT5G48670 44.512 2.46e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01485 SRF-TF 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01485 - - cam:101496969 187.193