Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01480 ATGGCTAGACAAAAGGTGAAACTTGCTTTCATTGTTAATGCTGCTGCAAGAAAAGCAACATATAAGAAAAGGAGCAagagtttattaaaaaaactcagTGAACTAAGCATTCTATGCGGAATCGATGCATGTGCTTTAATCTATGGTCCCTATGAGCCAGAACCTGAGATTTGGCCAACCCCTTCGGGAGTCCAAAATGTGGTATCGaaattcagaagaaaacctgaattCGAGcaaagtaagaaaaaattgagtcAAGAAGATTACTTGAGACAAAGAATTGTGAAGGCTGAAGACCAACTAAGGAAAATAAGGAATGAAAACCGGAAGAATGAGATGAAAGTGTTTACGTATGAATATTTTAAGCAAGGTGAAATTGTGCTCAACAATATTCTATTGAATGATTTGAATGACCTCTCTTGGTTTATTGACCATAATTTGAAGGACATTGGTAGAAGACTCCAAGCTAATGGTGAAGGTCAAATTATGATTGCTCCAACTCCAACTCCAAGCCAACTCCAACCCCAAATGGCACCACTGCCACTGCCATTGCCACTGCCACCTCCACCTCCACCGCCAGCCGCAACAGCATCTAGCAACAATGAAATGGCAACGATGGTGAGTCACGGCCATGCTGGGATGACCGCGAATAATGATGACATAATGCAAACCGGGTTTATGGACTTGATGAATGGAAAAGGGGATGATACTCTTCAAGATGGATTTTGGCATAACCTACTTCCTTGA 747 0.3882 MARQKVKLAFIVNAAARKATYKKRSKSLLKKLSELSILCGIDACALIYGPYEPEPEIWPTPSGVQNVVSKFRRKPEFEQSKKKLSQEDYLRQRIVKAEDQLRKIRNENRKNEMKVFTYEYFKQGEIVLNNILLNDLNDLSWFIDHNLKDIGRRLQANGEGQIMIAPTPTPSQLQPQMAPLPLPLPLPPPPPPPAATASSNNEMATMVSHGHAGMTANNDDIMQTGFMDLMNGKGDDTLQDGFWHNLLP 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01480 248 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 210 - -
Tsu03g01480 248 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 210 - -
Tsu03g01480 248 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Tsu03g01480 248 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Tsu03g01480 248 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu03g01480 248 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Tsu03g01480 248 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Tsu03g01480 248 Coils Coil 87 114 - -
Tsu03g01480 248 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu03g01480 248 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01480 Tsu-Chr3 14519767 14520513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01480 1 155 Type I MADS-box Gene Family AT5G48670 50.323 4.52e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01480 SRF-TF 5.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01480 - - gmx:100813231 210.305