Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01479 ATGACTAGTAGAAATAGGGAACTTCAATACATAGCTGAAGATTCGAAGAGGAAGCTATCGTTGTTCAAAAGGAAAAGAGGTATAACTAAGAAGATTAAGGAAATTACCACTCTTTGTGGAATTGACGCGTGTTCTATAATCTATGATGAAAACAATTCTCAAGCAACAGTTTGTCCTTCAAAAGATCGAGTTCAAATGGTGTTGGACAAGTTTAGGAGTTTTCCAGAATCAGAACAAAGGAAAACGATTGTGGATCATGAGGGCTTCGTGAAGAAATCCATAGAAAAAGCCCGTGAGGagttgaagaaagaaaaggacAAATCCAAGAAGAATGAGATGAATAATCAAATTGATCATTTCATTCAAACTGGTGAATTTGATGGAAATGTGAGTGAGAGTGATCTTGAAGATCTGTCTTCGCTTATTGTTACAAACATAAAGGAAGTCGATCAGAGGATTGAATGGATTCAAGCTCAAGACGAGAGTGACAATTGA 495 0.3515 MTSRNRELQYIAEDSKRKLSLFKRKRGITKKIKEITTLCGIDACSIIYDENNSQATVCPSKDRVQMVLDKFRSFPESEQRKTIVDHEGFVKKSIEKAREELKKEKDKSKKNEMNNQIDHFIQTGEFDGNVSESDLEDLSSLIVTNIKEVDQRIEWIQAQDESDN 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01479 164 Coils Coil 91 116 - -
Tsu03g01479 164 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu03g01479 164 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 160 - -
Tsu03g01479 164 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Tsu03g01479 164 MobiDBLite consensus disorder prediction 101 128 - -
Tsu03g01479 164 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Tsu03g01479 164 PANTHER MADS BOX PROTEIN 2 160 - -
Tsu03g01479 164 Gene3D - 13 123 IPR036879 GO:0003677|GO:0046983
Tsu03g01479 164 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Tsu03g01479 164 SUPERFAMILY SRF-like 5 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01479 Tsu-Chr3 14512178 14512884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01479 1 154 Type I MADS-box Gene Family AT5G48670 42.308 3.35e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu03g01479 SRF-TF 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01479 - - mtr:MTR_2g035580 187.193