Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01475 atgaataataattcaAAGAGAAGTGGTGTAAGAAAATATCACAAATCAGAACAGCCACGTTTGAGATGGACACCTGAACTCCATGAATACTTTGTTCAAACTGTTGAAAGTTTAGGTGGAAAAGAGAAGGCAAGTCCAAAACACATCTTGAATATGATGCAAGTGAAGGGACTAAGAATCTCACACATTAAGAGTCATCTTCagatgtACAGAAACGTGAAGGGACAGAGGAATCATGCACCAATATTGGAAGAAAATGCAAAGTTCAATAATCACCCAACATGTTCCACTTGTTCACCCCAAAGATCAAGGAATATCAATCAAGAACTTCAGACATTATTCAATAAAGGACTTTCACAAAGAAGTGAAACGGATCACTATGATCTAAATCAGGAGCCAGAGTCAAGTGCATGCTTTCTTAGTGATATGTcaaatgaagaaggaaataGTAGGACTACCAAATATCTAAATCTACCATTCCCTTTCAGTTCTCTGTTAATTCCAATGCCAGTGGTGCATAATGATCAAGGCAAAACACATGTTTCTTCACCAAATTCGACAGATAATCACTTTGTAGACTCTAGTTCTAtaaaatctaatggaagagatTATATAAACTTAGACCTATCAATTTGA 636 0.3349 MNNNSKRSGVRKYHKSEQPRLRWTPELHEYFVQTVESLGGKEKASPKHILNMMQVKGLRISHIKSHLQMYRNVKGQRNHAPILEENAKFNNHPTCSTCSPQRSRNINQELQTLFNKGLSQRSETDHYDLNQEPESSACFLSDMSNEEGNSRTTKYLNLPFPFSSLLIPMPVVHNDQGKTHVSSPNSTDNHFVDSSSIKSNGRDYINLDLSI 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01475 211 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Tsu03g01475 211 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 9 136 IPR044848 GO:0003700
Tsu03g01475 211 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Tsu03g01475 211 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 9 136 - -
Tsu03g01475 211 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Tsu03g01475 211 Gene3D - 18 75 - -
Tsu03g01475 211 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01475 Tsu-Chr3 14466873 14473015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01475 3 74 G2-like Transcription Factor Family AT1G14600 59.722 6.52e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tsu03g01475 Myb_DNA-binding 2.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01475 - - gmx:100791958 250.751