Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01467 ATGAATCCAAACATCAATGATCAAATCCCACTTGAAACTCTGGTAAAGACCATGTTGTTGTTTTCTGATTCAATGTTAAAATTCAATCTCTTTCATGTTTCAACTCATACAACAACACTTCACTCTACTGTAACTGTTTATTGCTGCAatgatttttctaatttatctGTTTCTGTTtccaaaacaaaacatcatcaaGATGACTCATTTACGTTATCAAGCATCATTAAATCATCTAGGTTGTCCCCTGAAACATCTCTTAAACTTTCCCAAAGGTTGAAAAATAGAAACTCTGATGATGGCCCAAATGCTGTAATTCACCTTCTCAGAAACTACGGCTTCTCTGCTTCCCAATTATCAAGTCTTGTTAAGAAACACCCTTTTGTTCTTTTATCGAAACCCGAAAAGACCCTTTTGCCTAAACTCAACTTTTTGCTATCCATTGGGGTTTCAATCACTGATCTCCCCAAAATCCTAATTTGGAACACTGATTTGTCAACAACAAGTTTGGACAAAAACATTATACCTCTTTATCAGACTATTAGGAGCTTTGTTCGCAATGATAAAGAGGTTGTTTCAGTTTTGAAGCAGTGGACAGTGAACTATTACACTGATTTCATGGTTCCAAACATTGAGCTTTTGAGGAATCTTGGTGTGCCTCAACGTTTCATTTCCCTTTTGGTATCTAATTTTCCCAATGAAGCATTCATCGAGCATTCTAGATTTGTTGAGGCTGTTAATTTAGTAAAGGAAATGGGCTTCGATCCTTTGAAGgcgaattttgtttttgcacTTCTAGTAATTGCAAGGATGGACAAAGAAACATGggaattgaaattgaagatttttGAGAGGTGGGGATGGTCGAAAGATATATGTCTTTCGGCGTTCCAAAAGGATCCTCGATATATGGTGACCTCGGAAAAAAAGATTATGGAAATAATGAGTTTCTTGGTGAACGATATGGGTTTTACACCAGAAGACATTGCTAGATGGCCTGCAATTCTGAACCGTAGTTTGGAGAAAACAATTGTCCCTAGATGTACAGTTATTAAGATTTTGAAGTCAAGGGGTTTGATAAAGAGTAGTTTGAGCCTAAATAGCATTATTATCTTAAATGAGAAAGCATTTTTGGAGAGATATGTTACCCGATTTGAGAAAGATTTGCCACTCTTATTGGATGCATATAAAGGTCAGAATTCCGATTGA 1209 0.3433 MNPNINDQIPLETLVKTMLLFSDSMLKFNLFHVSTHTTTLHSTVTVYCCNDFSNLSVSVSKTKHHQDDSFTLSSIIKSSRLSPETSLKLSQRLKNRNSDDGPNAVIHLLRNYGFSASQLSSLVKKHPFVLLSKPEKTLLPKLNFLLSIGVSITDLPKILIWNTDLSTTSLDKNIIPLYQTIRSFVRNDKEVVSVLKQWTVNYYTDFMVPNIELLRNLGVPQRFISLLVSNFPNEAFIEHSRFVEAVNLVKEMGFDPLKANFVFALLVIARMDKETWELKLKIFERWGWSKDICLSAFQKDPRYMVTSEKKIMEIMSFLVNDMGFTPEDIARWPAILNRSLEKTIVPRCTVIKILKSRGLIKSSLSLNSIIILNEKAFLERYVTRFEKDLPLLLDAYKGQNSD 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01467 402 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Tsu03g01467 402 SMART mt_12 120 151 IPR003690 GO:0003690|GO:0006355
Tsu03g01467 402 SMART mt_12 326 360 IPR003690 GO:0003690|GO:0006355
Tsu03g01467 402 PANTHER MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 31 399 - -
Tsu03g01467 402 Gene3D Transcription termination factor 3, mitochondrial 76 199 IPR038538 -
Tsu03g01467 402 Gene3D Transcription termination factor 3, mitochondrial 200 389 IPR038538 -
Tsu03g01467 402 PANTHER CGI-12 PROTEIN-RELATED 31 399 IPR003690 GO:0003690|GO:0006355
Tsu03g01467 402 Pfam mTERF 270 378 IPR003690 GO:0003690|GO:0006355
Tsu03g01467 402 Pfam mTERF 106 318 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01467 Tsu-Chr3 14292423 14293750 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Tsu03g01467 mTERF 9.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01467 K15032 - gmx:106799612 390.963