Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01454 ATGGTTTTGAAAGTTTCTCTCATTCTAGTTCTTCTCATTGTGTTACATTTCTTCACTTTAGAAGCTATTTCTAAGAATCACAATCACAATGTTGAGCCTAAAAAATCATTGACTGATTTTGCAGTTAGAGACTTAACAAGAATTCAAACTTTGCATAAAAGGGTCATTGAAAAGAAGAACCAAAACTTCATTTCAAGGATGCAAAATACAAAGGAAGAATCAAACAAGTCCTATAAGCCGCCGCCAGTTGTTGCTCCGGCTGCACCACCGGAATATTTTACCGGAAACTATTCAAGTCAGCTTGTGGCAACTTTGGAGTCAGGAGTCAGTTTTGGTTCCGGTGAGTATTTCATCGATGTGTTCATCGGTACACCATCAAAGCATTTTTCTCTAATACTCGATACCGGTAGTGATCTTAATTGGATTCAATGTGTTCCTtgttatgtttgttttgatCAAAATGGACCATATTATGATCCAAAAGATTCTAGTTCTTTCAACAATATAAGTTGTCATGATCCGAGGTGTCAATTCGTGACATCACCTGATCCTCCTCAGCCTTCCTGTAAGGCTGAAGAGAATCAAACTTGTCCGTATTTTTATTGGTATGGTGATAGCTCAAACACAACCGGCGATTTTGCACTTGAAACATTCACAGTGAATATTACAAAGCCTAATGGTAAAACCGAACTCAAAATCGTCGAAAATGTTATGTTTGGTTGTGGTCATTGGAATAGAGGATTATTTCACGGCGCAGCCGGATTATTAGGATTAGGAAGAGGGCCATTATCATTTGCTTCACAGCTACAAAATCTCTATGGTCATTCATTTTCCTATTGTTTTGTGGATAGAAATAGCAATTCAAGTGTTAGTAGCAAATTGATATTTGGTGAAAACAAAGAGCTTCTTAGTAACCATAACTTGAATTTCACTTCTTTTGTTGGTGGAAAAGAGAACACATTTTACTATGTTGAGATAAAATCTATTATGGTTGGTGGTGAGGTTTTAAACATACCTCAAGAAACATGGAATTTATCATCAGAAGGTGTTGGTGGTACAATAATTGATTCTGGTACAACTTTAACTTATTTTGCTGAACCTGCTTATGAGATTATTAAGGAAGCATTTATGAAGAAAATTAAGGGTTATGCAATTGTTGAAAGTTTTTTACCTTTAAAGCCATGTTATAATGTTAGTGGAATTGAAGAAATGGAATTGCCTGAATTTGGAATCTTGTTTTCAGATGGAGCTGTTTGGGATTTTCcagttgaaaattattttattcagATTGAATCTGATGATGTGGATTTCTGCAAAATCTCTTCAATCGCATCTTTCTCAATCTTGGAATTTATACTAAGGATAAGGAATCTGAATTCTCTCTTAGTTGATCGTGCCAACGGTGGATCCAGCATCAAAGATGACGAGGTGGAATTGATGCTTGATAGGTGCATTCTCTCAAATGCTGGTAGAGGAGTTGgggaaccacttgatgaagaAGTTTGCATAATagagaataataatagtacatGTGAAGAACTAACACTTCTGCAGGTTGGCCCATACAACTTACCGGGGTCCAGAGTTTGTAATTTTGGTGGTCAAGTCATACTTCCACTGGCTCAAACTATTGAACATGAAGAGATGCTGGAGGTTGTAAAATTGGAAGGTGTCGGGAATTCACCCGAGGATATGATGCCCAGAGACGTTCTCCTCTTACAAGCGAACTTTACTCTTAACGCTTTGATAGGGACTCAGTCTGCTCACTTTATTTTCTTACGGCTATGTAGTGGAGTAGATGAAAATGCTATGGGATCCTCTGCAAACTATACCCCTCTTCTACCTTCTGGTTTCTGTATCATCCCTCTTGATTCAAGGAAGGTCATTCTCTCACACAAAATGGGGCCTGCTATATGTTGTCGCCACCGCAAACTGTACAATGTATCCATGACTAAACTGTACAAGGTGACTCTATGA 1977 0.3657 MVLKVSLILVLLIVLHFFTLEAISKNHNHNVEPKKSLTDFAVRDLTRIQTLHKRVIEKKNQNFISRMQNTKEESNKSYKPPPVVAPAAPPEYFTGNYSSQLVATLESGVSFGSGEYFIDVFIGTPSKHFSLILDTGSDLNWIQCVPCYVCFDQNGPYYDPKDSSSFNNISCHDPRCQFVTSPDPPQPSCKAEENQTCPYFYWYGDSSNTTGDFALETFTVNITKPNGKTELKIVENVMFGCGHWNRGLFHGAAGLLGLGRGPLSFASQLQNLYGHSFSYCFVDRNSNSSVSSKLIFGENKELLSNHNLNFTSFVGGKENTFYYVEIKSIMVGGEVLNIPQETWNLSSEGVGGTIIDSGTTLTYFAEPAYEIIKEAFMKKIKGYAIVESFLPLKPCYNVSGIEEMELPEFGILFSDGAVWDFPVENYFIQIESDDVDFCKISSIASFSILEFILRIRNLNSLLVDRANGGSSIKDDEVELMLDRCILSNAGRGVGEPLDEEVCIIENNNSTCEELTLLQVGPYNLPGSRVCNFGGQVILPLAQTIEHEEMLEVVKLEGVGNSPEDMMPRDVLLLQANFTLNALIGTQSAHFIFLRLCSGVDENAMGSSANYTPLLPSGFCIIPLDSRKVILSHKMGPAICCRHRKLYNVSMTKLYKVTL 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01454 658 Coils Coil 53 73 - -
Tsu03g01454 658 Pfam Xylanase inhibitor N-terminal 116 297 IPR032861 -
Tsu03g01454 658 Gene3D Acid Proteases 94 297 IPR021109 -
Tsu03g01454 658 PRINTS Pepsin (A1) aspartic protease family signature 353 364 IPR001461 GO:0004190|GO:0006508
Tsu03g01454 658 PRINTS Pepsin (A1) aspartic protease family signature 122 142 IPR001461 GO:0004190|GO:0006508
Tsu03g01454 658 Gene3D Acid Proteases 298 443 IPR021109 -
Tsu03g01454 658 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN 2-LIKE 33 435 - -
Tsu03g01454 658 Gene3D - 456 519 - -
Tsu03g01454 658 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 131 142 IPR001969 GO:0004190|GO:0006508
Tsu03g01454 658 PANTHER ASPARTYL PROTEASES 33 435 IPR001461 GO:0004190|GO:0006508
Tsu03g01454 658 Pfam Xylanase inhibitor C-terminal 322 433 IPR032799 -
Tsu03g01454 658 ProSiteProfiles Peptidase family A1 domain profile. 116 466 IPR033121 -
Tsu03g01454 658 SUPERFAMILY Acid proteases 108 443 IPR021109 -
Tsu03g01454 658 CDD pepsin_A_like_plant 115 433 IPR034161 -
Tsu03g01454 658 SUPERFAMILY Galactose mutarotase-like 460 510 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01454 Tsu-Chr3 14201991 14214533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01454 506 631 Homeobox Transcription Factor Family AT1G52150 47.482 6.03e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01454 K22683 - gmx:100818203 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01454 03 14201991 14214533 Tsu03g01454 03 14201991 14214533 ECH
Tsu03g01454 03 14201991 14214533 Tsu05g03726 05 48568329 48574598 PCT