Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01440 ATGTCTTCCGACACTTCTTTGGATGGGGAATTGTCGAGGAAGACATCGTTTTTGGGTTTAAGGCTATGGGTTTTGATTGGATTAGGTGTTGGTGCATTTATAGTTTTGATTCTTTGTTTATTATCTATATGGATGTTTCGGAAAAAAACACGGAGATCAGTTGACAAGTACTCTTCATCGCAAATACCACATGTCTCGAAAGATATCAAAGTAGACAAGGTTGGTGTACAACCGTCTCATGATCAAGTAGAGCGTGTGTCTATTCATGTTCATGATAATAACATGGCAAGTGATAAAAATTCAGATAAGTTGTTTGTTCATTTGAGTAAATCTAGTGATCCTGATAATATTAGTCAGTGTAGCTCGGTTTATCATCACGAGAGAGGATTAAGTTCGATGTCGGGAGAAGACGGGAACTTTGGAACTGTTAAGAAGCAGTATATGGTAACTGCTTCTCCTCTGATTGGATTGCCTGAAGGTTCTCATCTTGGGTGGGGACATTGGTTCACACTTAGAGATCTCGAACTTTCAACTAACCGTTTCGCTGCTGGGAATGTGATCGGTGAGGGTGGATATGGAGTTGTTTATAAGGGAAGATTGATCAATGGATCTGAGGTTGCAGTTAAGAGACTTCTTAACAACTTGGGACAAGCAGAGAAAGAATTCAGGGTTGAAGTAGATGCTATAGGCCACGTCAGACATAAACATCTGGTGCGCTTACTTGGATTTTGCATAGAAGGAGTTCACAGGTTGCTTGTGTATGAGTATGTGAACAATGGTAACTTAGAACAATGGTTACATGGTGCAATGAGACAACATGGAGTACTTACATGGGAAGCTCGCATGAAAGTTATTCTAGGGACAGCAAAAGCGCTTGCTTACTTACATGAAGCAATAGAACCAAAAGTTGTTCACCGGGATATAAAGTCGAGCAACATTTTAATTGATAGTGAGTTCAATGCAAAGGTTTCTGATTTTGGTTTAGCCAAACTTTTGGATTCAAGCGAAAGTCACATAACTACCAGAGTAATGGGAACATTTGGTTATGTTGCACCCGAATATGCTAATACCGGCTTGTTAAACGAGAAGAGTGACATTTACAGTTTTGGTGTTCTCCTACTAGAAGCAATCACCGGAAGGGACCCGGTAGACTATACGCGTCCTGCCAACGAGGTGAATCTTGTTGAgtggatgaagatgatggtggGGACAAAGAGGATCGAGGAAGTTGTGGACTCAAGCCTTGAAGCAAAACCGCCAACTCGTGCCTTAAAGCGTGCTCTTCTTGTTGCGTTTAGGTGTGTTGATCCTGATTCTGAGAAGAGACCCAAAATGAGTCAGGTTGTAAGGATGCTTGAAGCCGATGAATATCCATTCAGAGAGGATCGAAGGAATAGAAGGAGCCGCACCGCCAGCATGGAAATTGAATCTCTAAAGGATATCTCTGGTCCTTCAGATATCGATAAGACGACAAAAGGTTCTGAAGAATCTGCAGTTGAGAACCACATGACTTAA 1515 0.4092 MSSDTSLDGELSRKTSFLGLRLWVLIGLGVGAFIVLILCLLSIWMFRKKTRRSVDKYSSSQIPHVSKDIKVDKVGVQPSHDQVERVSIHVHDNNMASDKNSDKLFVHLSKSSDPDNISQCSSVYHHERGLSSMSGEDGNFGTVKKQYMVTASPLIGLPEGSHLGWGHWFTLRDLELSTNRFAAGNVIGEGGYGVVYKGRLINGSEVAVKRLLNNLGQAEKEFRVEVDAIGHVRHKHLVRLLGFCIEGVHRLLVYEYVNNGNLEQWLHGAMRQHGVLTWEARMKVILGTAKALAYLHEAIEPKVVHRDIKSSNILIDSEFNAKVSDFGLAKLLDSSESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYTRPANEVNLVEWMKMMVGTKRIEEVVDSSLEAKPPTRALKRALLVAFRCVDPDSEKRPKMSQVVRMLEADEYPFREDRRNRRSRTASMEIESLKDISGPSDIDKTTKGSEESAVENHMT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01440 504 ProSitePatterns Protein kinases ATP-binding region signature. 187 209 IPR017441 GO:0005524
Tsu03g01440 504 SMART serkin_6 181 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01440 504 ProSitePatterns Serine/Threonine protein kinases active-site signature. 303 315 IPR008271 GO:0004672|GO:0006468
Tsu03g01440 504 SUPERFAMILY Protein kinase-like (PK-like) 164 454 IPR011009 -
Tsu03g01440 504 Coils Coil 201 221 - -
Tsu03g01440 504 Gene3D Phosphorylase Kinase; domain 1 163 256 - -
Tsu03g01440 504 ProSiteProfiles Protein kinase domain profile. 181 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01440 504 MobiDBLite consensus disorder prediction 462 504 - -
Tsu03g01440 504 Gene3D Transferase(Phosphotransferase) domain 1 257 470 - -
Tsu03g01440 504 CDD STKc_IRAK 187 453 - -
Tsu03g01440 504 PANTHER RECEPTOR-LIKE KINASE PLANT 2 493 - -
Tsu03g01440 504 PANTHER OS01G0323000 PROTEIN 2 493 - -
Tsu03g01440 504 MobiDBLite consensus disorder prediction 481 504 - -
Tsu03g01440 504 Pfam Protein kinase domain 184 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01440 Tsu-Chr3 14005092 14008692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01440 19 455 Trihelix Transcription Factor Family AT1G70460 39.729 5.29e-97 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Tsu03g01440 Pkinase 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01440 - - gmx:100813931 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01440 03 14005092 14008692 Tsu03g01440 03 14005092 14008692 ECH
Tsu03g01440 03 14005092 14008692 Tsu05g03745 05 48686137 48688775 PCT
Tsu05g02719 05 37217645 37221384 Tsu03g01440 03 14005092 14008692 PCT