Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01433 ATGGAATTTCTATCTTCTATTGTTGGAACAATAGCAAATTTTACTGTTGTGCCTATTGGACGTCAAGCATGTTACTTGATATTCTACAGAAGCAATTTCAGTACGTTAGCGGTTCATGTTGCAGACCTTGAGGctgcaaaagaaagaatgatCCATTCGGTTCAACAAGAAGAGAGAAACGGTAAAACTATTGAAAGAGATGTGAAGAACTGGTTAGCGACAGTGGACAAGGTCATTGAGAAGGCAAATCAGCTTCAAAATGATCCTCGTCGTATCAATGCTAGGTGCTCAGCATGGCCGTTCCCCAATTTGATTCTGCGTCATCAACTAAGTAGGAAAGccacaaaaattgtaaaagatGTTATTCAAGTTCAAGGAAAAGGGATGTTTGACCGAGTTGGTTACCTTCCCCCTCTAGACGGAAAAACTTCCTCCTCTTCAACAAGAGGTGGTGAAAATTATGAGACAAGGGAGTCACTTAAAGAGAACATTATGAAGGCTCTAGCACACCATAATTCATGCAACATTGGGGTCTATGGGTTGGGTGGGGTGGGTAAGACCACTCTGGTGGGGGAAGTTTTTGAAATATGTAAGAAACACAAATTGTTCGATGTAGTTGTTAAAACCCATGTATCGGAAACtccaaacattaaaaaaattcaaggggAGATTGCAGATTTGTTGGGTCTACGATTCAATGAGGAGACTATTCTCGGAAGAGCACATCGCCTAAAGCAAAGAATCAAGATGGAGAAAAATATTCTTATCATTCTAGATAATATTTGGACCAAACTTGATTTGGAGAAAGTGGGAATTCCATTTGGTAATGAACATAATGGTTGCAAATTGTTGATTACATCTAGAAATCAAGATGTGTTGTTGCAAATGGATGTTCCAAAGGATTTCATTTTCAAACTTGAACTTATGAGTGAAAACGAGACATGGAGCTTGTTTCAATTTATGGTTGGGGATGTGGTTAAAGATAGCAATTTGAAAGGTGTAGCAATTCAAGTTGCTAAAAAATGTGCAGGTTTGCCTCTTTCGATTGTGGCGGTAGCTCAAGCATTGAAAGGTAAGGGGGATGTTCATTCTTGGAAAGATGCACTAAGGAGGTTAGAAAGTGATCATCATACCATTTTTTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAATGAGGGATATCTTCTTGCTTTTTGCAGTAATTCTAGGTAATGATGTACAGTACTGTCTGAAAGTTGCAATGAGTTTGGATATGTTAAAGCATATTAATACTGTAGATGATGCTAGAAACAGACTTTATTCAATAATCCATTCTTTGGAGGCGGCTTGTCTTTTGCTTGAAGATAAAACAAGTGGAGCTATCAAAATGCATGACTTTGTTCATGATTTTGCTATCTCCATAGCACGTAGGGACAAACATGTATTTCTAAGAAAACAATCAGACGAGGAATTTCCAACcaagaattttttaacaaggtGCACGCAGATCTTTCTACGTAGTTGTGTGCCCGAGCTTCTTCAAATGATTGATTGTCCAAACATTAAGTTTTTCTGGTTGATAAGTGAGAATCTTTCATTAGAGAtccatgataatttttttgaggGTATGGGAAGCCTTAGAGTCCTAGATTTAACATCTCTGAACTTGTCTTCATTACCCACTTCGTTTCGGTTCCTAACCGACCTTCAAACACtgtgtttgaatttttgtattttggAAAATATGGTTGAGATAGAAGCTTTGCAAAATTTAGTTATTCTTTGCCTTTGGGGTTCTTCAATGACCAAGTTGCCAAGAGAAATAGGGCAATTGACTCAATTGAGAATGCTTGATTTAAGCAATTCAGGAATAGAAGTAATCCCACCCAACATTATATCTAACTTGACTAAATTGGAGGAGTTGTACATGGGGAACACCTTTGTTAATTGGGAAGATGTGAATTCAAcggttcaaaacaaaaatgctAGCATTGATGAGCTTCAAAAACTACCCAACTTGACAACTCTAGAATTACAAATTCGAGAGACTTGGATGTTGCCAAGAGTCTTGCAGACGGTGTTTGAGAAGTTGGAAAGATATAAAATAGTTATTGGTGATGTATGGGAATGGTCTGATACTATGGATGGAAACTCAAAAACATTGATGCTCAAACTTGGTACTAACATACATTTGGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTAGATGATGTAGACGGAATTCAAAATGTGGTTTATCAACTAAATGGAGAAGGATTTCCATTGCTGAAACATCTCCACGTCCAAAATAATGCAAAAATGAAGCATATTGTTCAATCTCAAGAGAGGAATCAAATGCATGTGTCTTTTCCCATCTTGGAAACACTAGTACTTCATAATCTTAAAAATTTGGAGCATATATGTCTTGGTCCACTTTCAATTACTTCTTTTGGAAGTCTAAGTGTTATCAAAGTCAAAAATTGTGTCCAATTAAAGTATCTTTTCTCCTTTACATTGGTTAAAGAACTTTCCCACCTTTCTAAGATGGAAGTTTGTGAGTGCAATTCTATGAAGGATATAGTGCTCAAAGACAACAATTCAAGTGCAGATTCAATAACTAATGAAAGCATTGAGGTTTTTCTAATTCGTTCTTTGATTTTAGAACATTTGGAAACACTTCAGAATTTCTTCTCCAAAAGTGAACCAAAGCATCAATGGTCAGAGCCTTATGTTTCAACACCATTATTCTATGCACagatTTCATTTCCTAATTTGGATGCCCTTAAATTGAGCTCTCtcaatatgaataaaatttggGATGACAATCATCAATCTATGTGCAACTTAACTAGCTTGATTGTGGAGAGTTGTGCTGAGTTGAAGTACTTATTCTTGTCTACTATGGTTGGAAGCTTTAAGAACCTTAAACACCTTGAAATATGTAATTGTCCATTGATGGAGGAGATAATAGCTAAAGAAGAGAATAACAATGAAATGGAAGAGgTTCACTGTTTCAAATTAGAGAAAATCATATTGAAAGACATGGACAACTTGAAGACAATATGGCACCGCCAATTTGAAACAGTGAAGATGTTGCAAGTGAGCAATTGTAAGAAAATTGTGGTGgtttttccttcttcaatacaAAAAACATATAACAATCTAGAGAGTTTGGAGGTCACGGATTGTTCTTTAGTAGAAGAGATATTTGAATTGACTTTCGATGAAAATAACAGTGTAGACAATACAACACATTTGAAAGTTACTATAGATGGATTGCCAAAACTGAAAAATATATGGAGTGGGGATCATCACAGTATTCTTAGTTTTCAAATTCTTATATTTGTAAAACTAAAAAACTGTGCAATCTTGGAGCATTTACTACCACTTTCTATAGCCACTCGTTGTTCACATCTTAAAGAACTTCACATAAAAAGTTGTGAAAATATGAAGGAAATTGTTGCAGAGGAGAAAGAATCTAGATTGAGTGCAGCTCCCACATTTGAGTTTAATCAACTAAGTAGTTTATGGCTTTGGAACTTAGATAAACTCAAGGGTTTCTATGCTAAAAAGCATACTCTAGCATGTCCATCTTTGAAGAGCATTAATGTTTACAATTGTGCAAAGTTGAATTTGTACACAACTTTATCTACAAGAAGTTCCAATTTTCAAGATGACAAACTCTCCGTTTTAACGCTACAACCACCTTTCATTGTCGAGGAGGTGATTCCAAATTTGGAGGGGTTGAGAATAAATCACAAAGAAGCAAAAGTGATATTGCAAGCCCAAAACTCAAGTGCCCTATTCACCAAAATGAACTTTCTTTCTTTGTCCGAATATAATATTGTAGAAGATGCTACATTTCCTTATTGGTTTCTTCAAAATGTGCACAATCTTGAGTTTCTAATTATTGAAGGGAGTCGCTTCAAGAAAATATTTCAAGATGAAGGACAAATAAGTGAGAAGAAGACTTACCCACGGCTCAAAAAGCTCACATTGAATCAATTACATGAGCTTCAACATATATGTGAGGAAGGATTTCAAATTGACCCAGTTCTTGCCTTCCTTGAACacttatatgttttttattgttctagTTTGTTAAGTTTATTGCCTTCCTCAGCCACCCTTATTCATCTGGAATATCTGGAGATAACAAGTTGCAAtgggttaaaaaaattaattacatctcCTACAGCACAAAATTTGGAAAAACTCACCTCACTGAAGATAAAAGACTGTAATTCACTCGAAGAAATAATTACTGGGGACGAAAATGTTGGCATTGCATTTATTAGATTAGAATTATTGATGTTGGATTGTTTGCCAAGCCTCAACAAATTTTGTTCTAGTAAGTGCTTCTTGAAGTTTCCATTGTTGAAGGAAGTAATTGTGAGGGAATGTCCACGCATGAAGATTTTTTCAGAAGGAAACACAAGTACACCAAATCTCCGAAAAGTTAAAATTGCAGAAAATGATGAATGGCGTTGGAAGGGAAACCTAAATGATACAATAGCCAACATATTTGAAGATAAGGCTGCATTTCGTAAATTCAATTGTTTAGCCTTAGCCGACTACCCTGAGCTAAAAGATTTCTGGTGTGGCCAACATAATTACAAGGTGTTTTGCAATCTAAAATCCCTAGTTGTGCAAAGATGTGATTTTTTATCACATGTACTTTTACCATCAAATGTAATGCAAGCGCTGCATGGATTGAAAGAATTAGAAGTAACAGACTGTGACTTGTTAGAAGCGGTGTTTGATGTGAAAGGTTTGAAGTCTAGAGAAATAATGATAAAACAAAGCACTCAGTTGAAAAGATTGAATTTATCGAGTTTACCAAAATTGAAGCACATCTGGAATGAGGATCCTCATAAAATCATCAGCTTTGAAAACCTACACAAAGTAAATGTTTCTATGTGCCAAAGCTTGTTATATATCTTTCCATTGTCACTATGCCAAGATCTTGAACATCTTGAAATGCTTGATATAATGTCTTGCGGAGTTGAGGAAATTGTAAAAATGGAAGAAGGATCAATggaaatcaattttaattttcccCAACTGAATACATTGAAACTATATTGTTTGACAAACCTCAAGAACTTCTATCGGGGAAAGCATGCTTTAGAGTGCCCTTCTTTGAAGATTTTTAATGTATACCGTTGTGAAACATTAAGAATGTTTTCCTTCAACCAAGAGCCTAACGCAGCAGGCGGAAATCCCACCATACCTCAGCAAGCTCTATTTTCAATGGAAAAGGTAATTCCCACCATACTTCTTTTTGTTTGTTCGT 5302 0.3436 MEFLSSIVGTIANFTVVPIGRQACYLIFYRSNFSTLAVHVADLEAAKERMIHSVQQEERNGKTIERDVKNWLATVDKVIEKANQLQNDPRRINARCSAWPFPNLILRHQLSRKATKIVKDVIQVQGKGMFDRVGYLPPLDGKTSSSSTRGGENYETRESLKENIMKALAHHNSCNIGVYGLGGVGKTTLVGEVFEICKKHKLFDVVVKTHVSETPNIKKIQGEIADLLGLRFNEETILGRAHRLKQRIKMEKNILIILDNIWTKLDLEKVGIPFGNEHNGCKLLITSRNQDVLLQMDVPKDFIFKLELMSENETWSLFQFMVGDVVKDSNLKGVAIQVAKKCAGLPLSIVAVAQALKGKGDVHSWKDALRRLESDHHTIFSALELSYNSLESDEMRDIFLLFAVILGNDVQYCLKVAMSLDMLKHINTVDDARNRLYSIIHSLEAACLLLEDKTSGAIKMHDFVHDFAISIARRDKHVFLRKQSDEEFPTKNFLTRCTQIFLRSCVPELLQMIDCPNIKFFWLISENLSLEIHDNFFEGMGSLRVLDLTSLNLSSLPTSFRFLTDLQTLCLNFCILENMVEIEALQNLVILCLWGSSMTKLPREIGQLTQLRMLDLSNSGIEVIPPNIISNLTKLEELYMGNTFVNWEDVNSTVQNKNASIDELQKLPNLTTLELQIRETWMLPRVLQTVFEKLERYKIVIGDVWEWSDTMDGNSKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVVYQLNGEGFPLLKHLHVQNNAKMKHIVQSQERNQMHVSFPILETLVLHNLKNLEHICLGPLSITSFGSLSVIKVKNCVQLKYLFSFTLVKELSHLSKMEVCECNSMKDIVLKDNNSSADSITNESIEVFLIRSLILEHLETLQNFFSKSEPKHQWSEPYVSTPLFYAQISFPNLDALKLSSLNMNKIWDDNHQSMCNLTSLIVESCAELKYLFLSTMVGSFKNLKHLEICNCPLMEEIIAKEENNNEMEEVHCFKLEKIILKDMDNLKTIWHRQFETVKMLQVSNCKKIVVVFPSSIQKTYNNLESLEVTDCSLVEEIFELTFDENNSVDNTTHLKVTIDGLPKLKNIWSGDHHSILSFQILIFVKLKNCAILEHLLPLSIATRCSHLKELHIKSCENMKEIVAEEKESRLSAAPTFEFNQLSSLWLWNLDKLKGFYAKKHTLACPSLKSINVYNCAKLNLYTTLSTRSSNFQDDKLSVLTLQPPFIVEEVIPNLEGLRINHKEAKVILQAQNSSALFTKMNFLSLSEYNIVEDATFPYWFLQNVHNLEFLIIEGSRFKKIFQDEGQISEKKTYPRLKKLTLNQLHELQHICEEGFQIDPVLAFLEHLYVFYCSSLLSLLPSSATLIHLEYLEITSCNGLKKLITSPTAQNLEKLTSLKIKDCNSLEEIITGDENVGIAFIRLELLMLDCLPSLNKFCSSKCFLKFPLLKEVIVRECPRMKIFSEGNTSTPNLRKVKIAENDEWRWKGNLNDTIANIFEDKAAFRKFNCLALADYPELKDFWCGQHNYKVFCNLKSLVVQRCDFLSHVLLPSNVMQALHGLKELEVTDCDLLEAVFDVKGLKSREIMIKQSTQLKRLNLSSLPKLKHIWNEDPHKIISFENLHKVNVSMCQSLLYIFPLSLCQDLEHLEMLDIMSCGVEEIVKMEEGSMEINFNFPQLNTLKLYCLTNLKNFYRGKHALECPSLKIFNVYRCETLRMFSFNQEPNAAGGNPTIPQQALFSMEKVIPTILLFVCS 1767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01433 1767 PANTHER - 1110 1213 - -
Tsu03g01433 1767 PANTHER - 1366 1506 - -
Tsu03g01433 1767 Pfam NB-ARC domain 158 389 IPR002182 GO:0043531
Tsu03g01433 1767 SUPERFAMILY RNI-like 1106 1424 - -
Tsu03g01433 1767 PANTHER - 1630 1734 - -
Tsu03g01433 1767 PANTHER - 23 1091 - -
Tsu03g01433 1767 Coils Coil 68 88 - -
Tsu03g01433 1767 PANTHER - 1606 1669 - -
Tsu03g01433 1767 SMART LRR_typ_2 608 631 IPR003591 -
Tsu03g01433 1767 SMART LRR_typ_2 540 562 IPR003591 -
Tsu03g01433 1767 Coils Coil 40 60 - -
Tsu03g01433 1767 PANTHER RPP4C3 1110 1213 - -
Tsu03g01433 1767 Gene3D Ribonuclease Inhibitor 490 960 IPR032675 -
Tsu03g01433 1767 Gene3D Ribonuclease Inhibitor 970 1188 IPR032675 -
Tsu03g01433 1767 Gene3D - 143 303 IPR027417 -
Tsu03g01433 1767 PRINTS Disease resistance protein signature 175 190 - -
Tsu03g01433 1767 PRINTS Disease resistance protein signature 606 622 - -
Tsu03g01433 1767 PRINTS Disease resistance protein signature 342 356 - -
Tsu03g01433 1767 PRINTS Disease resistance protein signature 248 262 - -
Tsu03g01433 1767 SUPERFAMILY L domain-like 1247 1733 - -
Tsu03g01433 1767 PANTHER RPP4C3 1630 1734 - -
Tsu03g01433 1767 SUPERFAMILY RNI-like 912 1210 - -
Tsu03g01433 1767 SUPERFAMILY L domain-like 459 850 - -
Tsu03g01433 1767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 401 IPR027417 -
Tsu03g01433 1767 Gene3D - 308 391 IPR042197 -
Tsu03g01433 1767 PANTHER RPP4C3 23 1091 - -
Tsu03g01433 1767 PANTHER RPP4C3 1606 1669 - -
Tsu03g01433 1767 PANTHER RPP4C3 1366 1506 - -
Tsu03g01433 1767 Gene3D Ribonuclease Inhibitor 1432 1735 IPR032675 -
Tsu03g01433 1767 Gene3D Ribonuclease Inhibitor 1229 1403 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01433 Tsu-Chr3 13851621 13863079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01433 176 628 WRKY Transcription Factor Family AT5G45050 24.242 8.00e-16 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01433 - - mtr:MTR_2g089975 2316.58