Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01427 ATGCAGCAAGATCATAGGAAAAAGAATTCGACAGAGATGGACTTTTTCTCTGAATATGGTGATGCCAACCGGTACAAAATTCAAGAAGTCATTGGGAAAGGAAGTTACGGCGTTGTCTGTTCGGCCATTGACACTCATACCGGTGATAAAGTGGCCATTAAGAAAATTCACGACATCTTTGAGCATATATCTGATGCTGCACGCATTCTCCGTGAGATAAAGCTGCTTAGACTTCTACGACATCCTGATATTGTTGAAATAAAACACATTATGCTGCCTCCTTCTCGGAAGGACTTCAAAGATATATACGTTGTTTTTGAGCTCATGGAGTCCGATCTTCATCAAGTCATTAAAGCTAACGATGACTTGACGAAAGAGCACTAtcagttttttctttatcaATTGCTTCGAGCTCTGAAGTATATTCACACTGCGAATGTCTACCATCGAGATTTGAAGCCAAAAAATATACTGGCAAATGCAAACTGCAAActaaaaatttgtgattttggaCTAGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAGCTATGTGGATCATTTTACTCAAAgTATACGCCAGCAATTGATATATGGAGTATAGGTTGCATTTTTGCCGAAGTACTAACAGGAAAGCCACTTTTTCCTGGAAAAAATGTAGTCCATCAGTTGGATCTGATGACAGACTTGCTCGGGACTCCCTCACTGGACACTATATCTCGGGTGCGCAATGAGAAGGCAAGGAGATACCTAACTAGCATGAGAAAAAAACAGCCTGTGCCATTTGCGCAAAAATTTCCCAATGCCGACCCTTTAGCACTACGACTATTGGAAAGGTTACTTGCTTTTGACCCAAAAGACCGACCTACTGCTGAAGAGGCATTGGCCGACCCTTACTTCAAGGGACTAGCAAAAGTCGAGAGAGAACCGTCTTGCCAGCCTATCACCAAAAtggagtttgaatttgaaagacGAAGAGTCACAAAGGAAGAAATCCGAGAGCTAATTTTCCGCGAGATTCTAGAGTATCATCCTCAGCTTTTAAAAGACTACATTAATGGAACAGAGAGAACTAATTTTCTATATCCaagTGCTGTGGATCAATTCAGAAAGCAGTTTGCTCATCTAGaggaaaatggtaaaaatggTCCCGTTATGCCACTTGATCGAAAGCACGTTTCTCTTCCAAGGTCAACAATTGTACATTCAAATACGATACCGCAAAAAGAGCAAACAAGTATTGCTTCCAGCAAAAACCGGCATACACCCGAGGAATATAATAAGATATGTAGAGATACTGAAATTCCAATGCCAAGGCCGATACAAGGACCACAAAGAATTCCACTAGCAAAACCTGGTAAAGTTGTCGGGCCGGTTGTTCCATATGAATATGGAAATGTTGTTAAAGATTCTTATGATCCAAGGGCATTTATAAGAGGTTCTGTGCTTCCTCCTCAACCTGTTCCGCCGGCATATTACTATCAAAGGCCTGGTAGCACTGCAAATCAAGAAAGGTCAACAGCGGAAGGTGATAAGAGTGTGGTTTTGCAAGCGAAACATGGACAACAATGTGGAGTTGATTCCAAACTTGGACCAGATATAATCATTAATATCGATACAAATCCCTTTTTCATGACAAGGGTAGGAGCGAACAAATTAGAAAAAGATgatcaaattgcaaaagaaacaaacatgTTGCAATCAAAGACTCAATATGGTGGTGGAGTTGGTGCTGCAGCCGGCCCTCCGGCTCATAGAAAAGTTGGTCCTATTCAATATGGTATGACAAGAATGTTCTAG 1848 0.3929 MQQDHRKKNSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGDKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVMPLDRKHVSLPRSTIVHSNTIPQKEQTSIASSKNRHTPEEYNKICRDTEIPMPRPIQGPQRIPLAKPGKVVGPVVPYEYGNVVKDSYDPRAFIRGSVLPPQPVPPAYYYQRPGSTANQERSTAEGDKSVVLQAKHGQQCGVDSKLGPDIIINIDTNPFFMTRVGANKLEKDDQIAKETNMLQSKTQYGGGVGAAAGPPAHRKVGPIQYGMTRMF 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01427 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 491 - -
Tsu03g01427 615 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Tsu03g01427 615 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Tsu03g01427 615 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01427 615 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Tsu03g01427 615 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Tsu03g01427 615 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Tsu03g01427 615 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 9 491 - -
Tsu03g01427 615 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01427 615 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01427 615 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01427 Tsu-Chr3 13681546 13687850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01427 1 445 MAP Kinase Gene Family AT2G42880 87.220 0.0 800
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Tsu03g01427 Pkinase 8.3e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01427 - - gmx:100811788 1098.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01427 03 13681546 13687850 Tsu05g03770 05 49001975 49008372 PCT