Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01419 ATGGAGCTTCCAAATGAAAGTGGAGAAGGATCTGCTCAAAAGAAATTGGGAAGAgggaaaattgaaattaagagGATTGAGAACACAACCAATAGGCAAGTCACTTTTTGCAAACGCCGAAACGGATTGCTGAAGAAAGCCTATGAATTATCTGTACTTTGTGATGCCGAAGTTGCTCTCGTTGTCTTCTCAACCCGCGGTCGCTTGTATGAGTATGCTAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAACACAGAATCTGTATCTGAAGCTAATACCCagTTTTACCAGCAAGAATCATCCAAATTGCGAAGACAAATTCGAGATATTCAGAATCTAAATAGACATATCCTTGGTGAAGCTTTGGGATCTCTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTGGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTACGAGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAGCAAAATTTGATGCCAGAAACAATGTGTGATCAATCCATACCTTCACAAACATATGACCGAAATTTCTTTCCTGTTAATCTTCTTGGATCGGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCACTCCAACTTGTGTGA 729 0.3964 MELPNESGEGSAQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLLADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCDQSIPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01419 242 PANTHER MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN 12 231 - -
Tsu03g01419 242 CDD MADS_MEF2_like 17 91 IPR033896 GO:0000977|GO:0045944
Tsu03g01419 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 SUPERFAMILY SRF-like 17 96 IPR036879 GO:0003677|GO:0046983
Tsu03g01419 242 Coils Coil 175 195 - -
Tsu03g01419 242 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 12 231 - -
Tsu03g01419 242 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 Pfam K-box region 100 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu03g01419 242 Gene3D - 28 98 IPR036879 GO:0003677|GO:0046983
Tsu03g01419 242 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Tsu03g01419 242 Coils Coil 105 125 - -
Tsu03g01419 242 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01419 Tsu-Chr3 13567367 13574697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01419 1 242 MADS-box Gene Family AT3G58780 69.880 2.61e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu03g01419 K-box 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01419 K09264 - gmx:100808734 421.779