Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g01419 | ATGGAGCTTCCAAATGAAAGTGGAGAAGGATCTGCTCAAAAGAAATTGGGAAGAgggaaaattgaaattaagagGATTGAGAACACAACCAATAGGCAAGTCACTTTTTGCAAACGCCGAAACGGATTGCTGAAGAAAGCCTATGAATTATCTGTACTTTGTGATGCCGAAGTTGCTCTCGTTGTCTTCTCAACCCGCGGTCGCTTGTATGAGTATGCTAACAACAGTGTTAGAGCAACTATTGAAAGGTACAAAAAAGCATGTGCTGCTTCCACTAACACAGAATCTGTATCTGAAGCTAATACCCagTTTTACCAGCAAGAATCATCCAAATTGCGAAGACAAATTCGAGATATTCAGAATCTAAATAGACATATCCTTGGTGAAGCTTTGGGATCTCTGAGTCTCAAGGAACTAAAGAATCTTGAGGGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAGACGTTGTTGGCTGATGTGGAGTTCATGCAAAAGCGGGAAATTGAGCTGCAAAACCACAACAATTATCTACGAGCTAAGATAGCTGAACATGAAAGAGCTCAACAACAGCAGCAAAATTTGATGCCAGAAACAATGTGTGATCAATCCATACCTTCACAAACATATGACCGAAATTTCTTTCCTGTTAATCTTCTTGGATCGGATCAGCAGCAGTATTCGCGTCAAGACCAAACTGCACTCCAACTTGTGTGA | 729 | 0.3964 | MELPNESGEGSAQKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNSVRATIERYKKACAASTNTESVSEANTQFYQQESSKLRRQIRDIQNLNRHILGEALGSLSLKELKNLEGRLEKGLSRVRSRKHETLLADVEFMQKREIELQNHNNYLRAKIAEHERAQQQQQNLMPETMCDQSIPSQTYDRNFFPVNLLGSDQQQYSRQDQTALQLV | 242 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g01419 | 242 | PANTHER | MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN | 12 | 231 | - | - | |
Tsu03g01419 | 242 | CDD | MADS_MEF2_like | 17 | 91 | IPR033896 | GO:0000977|GO:0045944 | |
Tsu03g01419 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 25 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | ProSitePatterns | MADS-box domain signature. | 18 | 72 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | SUPERFAMILY | SRF-like | 17 | 96 | IPR036879 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | Coils | Coil | 175 | 195 | - | - | |
Tsu03g01419 | 242 | ProSiteProfiles | MADS-box domain profile. | 16 | 76 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 12 | 231 | - | - | |
Tsu03g01419 | 242 | PRINTS | MADS domain signature | 38 | 53 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | PRINTS | MADS domain signature | 53 | 74 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | PRINTS | MADS domain signature | 18 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | Pfam | K-box region | 100 | 186 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Tsu03g01419 | 242 | Gene3D | - | 28 | 98 | IPR036879 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | SMART | madsneu2 | 16 | 75 | IPR002100 | GO:0003677|GO:0046983 | |
Tsu03g01419 | 242 | Coils | Coil | 105 | 125 | - | - | |
Tsu03g01419 | 242 | ProSiteProfiles | K-box domain profile. | 102 | 192 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g01419 | Tsu-Chr3 | 13567367 | 13574697 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g01419 | 1 | 242 | MADS-box Gene Family | AT3G58780 | 69.880 | 2.61e-119 | 338 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Tsu03g01419 | K-box | 1.2e-24 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g01419 | K09264 | - | gmx:100808734 | 421.779 |