Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01414 ATGTCGTCATCAAATTCACCATGTGCAGCGTGCAAGTATCTCCGACGTAAGTGCACTCAAGAATGCGATTTCGCGCCCTATTTCCTTCCCGAAAGTCCACAGAGATTCGCTAATGTGCACCGCGTCTTTGGTGCAAGCAATGTTGCTAAGCTCTTGAAAGAGCTTAATGCAACTGACCGTGAAGACGCGGTGAAATCCCTAGCGTACGAGGCAGAGTCTCGTATAAAAGATCCGGTCTACGGCTGTGTTGGTTTGATCTCGATGCTCCAACAGCGGTTAAAAGAAATCCAACATGAACTCCATGCCGCGAAAAAGGAGCTCTCTAGTTACAATCTGAATCCTCAAACAATGCAGTACTTGTTGACTCATCCCGGAACGGTTATAATGCCTCAGCAGCAACAGCAGCAACAATGGAATAATCCGCAATTCGCAGGTTTCGCGAACAATTTTCCTCCTGAGATTGTTGGAGGAGGAGGTGGGATAGTTATTCGTGATGTTCAGCAGCAGCAACAAGATCAGGAGTTTATGGAAGCTCATCAGTTACTTGCTGCTCAGCAGCAGTATATGCTTAGGTATGGTGGTGGACATCAGATGGGTAGTGGTGGTGTTGCTGCTGTTTCTGATCATGCTGATGGTGGTCAGTCATTAAGAATGGGAAATTTTGATAATGGAGCTGCTAGTGGCGGTGCCGGGGTTGGTTATTATCAGATTCAGCAACAAGGAGGAggagaacaacaacaacagaacTATCATCATAATGTTGTTGGTGGTGTTGCTGCTCATGGTAATCCAATTGAGGCACAGCTTCTGTTGTCTCCACAGAATCAGGAAACTGGTGAGGATGGTAAAAGTGTTGGAAGCACACATcattcttgttga 879 0.4471 MSSSNSPCAACKYLRRKCTQECDFAPYFLPESPQRFANVHRVFGASNVAKLLKELNATDREDAVKSLAYEAESRIKDPVYGCVGLISMLQQRLKEIQHELHAAKKELSSYNLNPQTMQYLLTHPGTVIMPQQQQQQQWNNPQFAGFANNFPPEIVGGGGGIVIRDVQQQQQDQEFMEAHQLLAAQQQYMLRYGGGHQMGSGGVAAVSDHADGGQSLRMGNFDNGAASGGAGVGYYQIQQQGGGEQQQQNYHHNVVGGVAAHGNPIEAQLLLSPQNQETGEDGKSVGSTHHSC 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01414 292 MobiDBLite consensus disorder prediction 273 292 - -
Tsu03g01414 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 32-RELATED 1 240 - -
Tsu03g01414 292 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Tsu03g01414 292 Coils Coil 86 113 - -
Tsu03g01414 292 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 240 - -
Tsu03g01414 292 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01414 Tsu-Chr3 13475742 13476620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01414 1 135 AS2 family AT5G66870 65.185 4.13e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu03g01414 LOB 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01414 - - mtr:MTR_3g452660 333.954