Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01413 ATGGTAATACTTATATTGAACCAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCATCAAAGAAGTTGAAGGAATGTGAAAAAGCAGTTATGAAACTGAAATTTGAAGAAGCAATTTCTGTACCAGGATCTGTAAAGCGTCCAATAGCTGAATCCATTGATTTCCATTCAATAGATGTCGAGCCACAGTATTCAGGAGCAAGAATAGAAGGGGATGTTATTACTTTGGATTTTGTAAAGAAAATGATGGATGATTTCAAGAATCAGAAGTGCTTGCATAAACGGTACGCGTTCCAGATTGTGTTGCAAACAAAAGAGATGTTGCAAGCTCTGCCTTCTCTTGTTGACATAACCGTTCCTCACGGAAAACATTTTACTGTTTGTGGTGATGTGCATGGTCAGTTTTATgatcttttgaatatttttgagCTCAATGGGCTTCCTTCAGAAGAAAATCCATATCTATTTAATGGTGACTTTGTGGATAGAGGATCATTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAGATATATGGTTTTGAGGGTGAGGTGCGCTCAAAGTTGAATGAAACATTTGTTGAACTATTTGCGGAAGTGTTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAGTTTTCATAGTCCATGGAGGTCTTTTTAGTGTTGATGGTGTCAAACTCTCTGAAATTCGATCAATTAATCGGTTTTGTGAGCCTCCAGAGGAAGGGTTGATGTGCGAGTTGTTATGGAGCGATCCACAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGCGGTGTAGGTCTTTCTTTCGGTGGGGATGTTACAAAAAGGTTCTTGAAGGATAATAATTTAGATTTAGTTGTGCGATCTCATGAAGTAAAGGACGAGGGTTATGAGATTGAACATGATGGTAAACTCATAACTGTATTTTCTGCTCCAAATTACTGTGATCAGATGGGTAACAAAGGTGCCTTTATTCGATTTGAAGCGCCTGATTTGAAACCTAACATTATTACATTCGCAGCAGTGCCACACCCTGATGTTAAGCCAAtggcttatgcaaacaacttccTCAGGATGTTCTCATAA 1161 0.3807 MVILILNQVKKMCPNDPDASKKLKECEKAVMKLKFEEAISVPGSVKRPIAESIDFHSIDVEPQYSGARIEGDVITLDFVKKMMDDFKNQKCLHKRYAFQIVLQTKEMLQALPSLVDITVPHGKHFTVCGDVHGQFYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLNETFVELFAEVFCCLPLAHVINEKVFIVHGGLFSVDGVKLSEIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGGDVTKRFLKDNNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIITFAAVPHPDVKPMAYANNFLRMFS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01413 386 Gene3D - 38 385 IPR029052 -
Tsu03g01413 386 PIRSF PPPtase_5 3 386 - -
Tsu03g01413 386 Pfam PPP5 TPR repeat region 23 116 IPR013235 -
Tsu03g01413 386 PANTHER BNAC09G39960D PROTEIN 6 385 - -
Tsu03g01413 386 CDD MPP_PP5_C 64 379 IPR041753 -
Tsu03g01413 386 Pfam Calcineurin-like phosphoesterase 124 318 IPR004843 GO:0016787
Tsu03g01413 386 SUPERFAMILY Metallo-dependent phosphatases 72 380 IPR029052 -
Tsu03g01413 386 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 6 385 - -
Tsu03g01413 386 SMART pp2a_7 92 368 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 307 327 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 329 345 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 251 278 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 154 181 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 221 247 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 187 211 IPR006186 GO:0016787
Tsu03g01413 386 PRINTS Serine/threonine phosphatase family signature 124 151 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01413 Tsu-Chr3 13451760 13457465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01413 127 311 Calmodulin-binding Proteins AT5G63870 37.443 4.25e-39 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01413 K04460 - sly:543849 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01413 03 13451760 13457465 Tsu03g01413 03 13451760 13457465 ECH