Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01366 ATGGCAACAATCAAAGCTTCTTACACTGTGAAACCAAATGAATCAACTCCAAAGGGTATTTTATGGCTCTCAGATTTAGATCAAGTTGTGCGTCTCAGTCACACACCACTTATTTACATTTACAAATCACagaaacagaaccaaaaaaacatAACCTTAGTAGAAACCTTAAAAAACTCTCTCAGCAAAATTCTTGTTCATTACTATCCTATAGCAGGTCGTTATTGTTACAAAGAAGGTGGTCGATTAGAATTGATTCTCAATGCAAAAGGAGCTGTTTTGATAGAAGCTGAAACAGAAAAAACAATTCATGATTATGGTGACTTTTCACCTTCTGACTCAACCAAAGAGCTTATTCCGAAAATCGATTATGATCAACCAATTGAAGAAATTCCATTGTTTGTTGCTCAAGTAACAAGATTTCAAAACAAAGATGAAAGTTTTGGATTTGCAATTGGAATTGCTTATTCACACCCTTTATCTGATGGGGTTGgttgttttaactttttgaacTCATGGGCTAAAATTTCAAGAGGTGAAACACTTGAGGATAATGAATTACCATTTTTAGATAGAACAGTTCTCAAATTCTCACACACCCCAATTGAACCGCGCTTTGAACACATAGAATTGATGCCGTTGCCACTCATTCTCGGAAGATCTGACAATCAtattgaaagaaagaagaaaacaacAGCTGAATTATTGAAACTCACAAAAGAACAAGTTGAAAAGTTGCAGAAAAAGGCTAATGAATTTGATATTCCAAAAGGGTTGAAACCTTATAGTAGATTTGAAGCAATTAGTGCACATATATGGAAATGTGCATCGAAAGCTCGCGAGCTTGAAGAGAATCAACAAAGTGTTGTTAGATTCAATGTTGAAATACGTAATAGAATAATTCCGAATCTTCCTAAAAATTATTACGGAAATGCTTTGATTCAAACTTCGACAGGAGGGTATATCGGAGAAATCACATCAAAGCCGTTGAGTTATATTGCAATGAAAATAAGGGAAGCACATGAGTTGATATCAAATGAGTATATAAGGTCACAAATTGATGTTATTAGAAGTTTTGAGAATTTAGATGATGcaagaaaattatttatagGTGGAGAAGGTAAGAATGTAACATATTTTGGGAATCCTAATCTTCATATAACAAGTTGGATGGCTTTGCCTGCATATAAATCAGATTTTGGGTGGGGAAAGccattttattttggtttaggATATGTGTCACCACATGATAGGggaataatttatttgaatcCTAATGGAGATGGTTCTGTTATTGTGTGTATGCACCTTCAAATTGCATTGATGCAGATTTTCAAGAAGTTCTTTTATGGAGATATAAATGAATTGTTCACATCAGCCAGATTGTGA 1389 0.3189 MATIKASYTVKPNESTPKGILWLSDLDQVVRLSHTPLIYIYKSQKQNQKNITLVETLKNSLSKILVHYYPIAGRYCYKEGGRLELILNAKGAVLIEAETEKTIHDYGDFSPSDSTKELIPKIDYDQPIEEIPLFVAQVTRFQNKDESFGFAIGIAYSHPLSDGVGCFNFLNSWAKISRGETLEDNELPFLDRTVLKFSHTPIEPRFEHIELMPLPLILGRSDNHIERKKKTTAELLKLTKEQVEKLQKKANEFDIPKGLKPYSRFEAISAHIWKCASKARELEENQQSVVRFNVEIRNRIIPNLPKNYYGNALIQTSTGGYIGEITSKPLSYIAMKIREAHELISNEYIRSQIDVIRSFENLDDARKLFIGGEGKNVTYFGNPNLHITSWMALPAYKSDFGWGKPFYFGLGYVSPHDRGIIYLNPNGDGSVIVCMHLQIALMQIFKKFFYGDINELFTSARL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01366 462 PANTHER SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE 4 453 - -
Tsu03g01366 462 Gene3D - 2 213 IPR023213 -
Tsu03g01366 462 Coils Coil 229 249 - -
Tsu03g01366 462 Pfam Transferase family 3 449 - -
Tsu03g01366 462 Gene3D - 220 451 IPR023213 -
Tsu03g01366 462 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 4 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01366 Tsu-Chr3 13086637 13088092 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01366 4 450 Monolignol Biosynthesis Gene Families AT5G48930 33.333 8.43e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01366 K13065 - gmx:100778626 543.117