Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01348 ATGAGTTGTTTTCATTGTTGTGCATCATCACACGAAAGGATCAACAAGAAGTCATTGAAGAGAAGTATTAAGCAATTCCATAATGCAAAAACTTTAACCTCATTTGCTAATATTAATGATAGTGGCAAGAGAAGGTTCATAGAAGATGAGATAGCAAAGCTTGGAAAAGGAAATGTTACCTCTAAGATTTTTTTGTATCGCGATCTATGTGCTGTAACTCAGAATTTTCACCCTACCAATATGATTGGAGAAGGAGGCTTTGGAAGGGTATACAAAGGAACAATTAAAAAGACAAATCAAGTTGTTGCTGTGAAGCAACTTGACAGAAATGGATTTCAAGGGAATAGAGAATTTCTTGTAgaggttttgattttgagtCTTTTGCATCACCCTAACCTTGTCAATTTAGTAGGGTATTGTGCAGAAGGTGATCAAAGGGTTTTGGTATATGAATATATGGCTAATGGTTCCTTAGAAGATCACTTGCTTGATTTAGCTCCTGGTACAAAGCCTTTGGACTGGAAGACAAGAATGAAAATCGCAGAAGGAGCGGCTAAAGGGCTTGAATATTTACACGAACAAGCAAACCCTCCGGTGATATATCGCGATTTCAAAGCATCAAATATACTACTAGATGAAAACTACAATCCAAAGCTTTCTGACTTTGGACTTGCAAAGCTCGGTCCAACTGGTGATAAAACACATGTATCGACCAGAGTGATGGGAACTTACGGATATTGTGCTCCCGAGTATGCATCAACAGGGCAATTAAGTACAAAATCAGATGTGTATAGTTTTGGAGTTGTGTTTTTGGAGATTATCACAGGAAGAAGAGTCATTGACAattcaagaccatcagaagAGCAAAATTTAGTCATTTGGGCACAACCTCTTCTAAAAGACAGAAAGAAATTCACACTAATGGCAGATCCCTTGCTAGAAGATAAATACCCTATAAAGAGTCTATACCAAGCTCTAGCTGTTGCAGCAATGTGTCTCCAAGAGGAAGCCGATACTCGACCTTTAATCAGTGATGTAGTTACAGCTCTTGAATTTTTAGCAAAGGGAAAAATGATGATGGAGAAAAGATTACAAAAGAGTCTTTTCCTTCCCAAAGTGAAAGTGAAAATGGAAACAATGAATCTAATGAAGTAA 1155 0.3628 MSCFHCCASSHERINKKSLKRSIKQFHNAKTLTSFANINDSGKRRFIEDEIAKLGKGNVTSKIFLYRDLCAVTQNFHPTNMIGEGGFGRVYKGTIKKTNQVVAVKQLDRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCAEGDQRVLVYEYMANGSLEDHLLDLAPGTKPLDWKTRMKIAEGAAKGLEYLHEQANPPVIYRDFKASNILLDENYNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLSTKSDVYSFGVVFLEIITGRRVIDNSRPSEEQNLVIWAQPLLKDRKKFTLMADPLLEDKYPIKSLYQALAVAAMCLQEEADTRPLISDVVTALEFLAKGKMMMEKRLQKSLFLPKVKVKMETMNLMK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01348 384 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01348 384 SUPERFAMILY Protein kinase-like (PK-like) 62 373 IPR011009 -
Tsu03g01348 384 Coils Coil 375 384 - -
Tsu03g01348 384 Gene3D Phosphorylase Kinase; domain 1 38 152 - -
Tsu03g01348 384 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Tsu03g01348 384 Pfam Protein kinase domain 78 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01348 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Tsu03g01348 384 Gene3D Transferase(Phosphotransferase) domain 1 153 373 - -
Tsu03g01348 384 PANTHER RECEPTOR SERINE/THREONINE KINASE 2 363 - -
Tsu03g01348 384 PANTHER OS07G0668900 PROTEIN 2 363 - -
Tsu03g01348 384 CDD STKc_IRAK 82 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01348 Tsu-Chr3 12901869 12904272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01348 1 354 Glycoside Hydrolase AT3G07070 61.813 4.73e-161 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Tsu03g01348 Pkinase 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01348 - - cam:101510927 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01348 03 12901869 12904272 Tsu05g03803 05 49236912 49239670 PCT