Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01293 ATGGGTTGTTTTCTAAGTAAAGACAAAGATTCAGAACCAGAACACCACAATGGTTATAGATATGCTGAATCTTCTGGTCTTAGGAACAACAACCATGAACAACAAGTCAACCAAACAAGAACACCACAACCTAGTACTTCATCATATCAACCTCAAATACCATTGAAACCTTCATCAATTTCAGCTCCAAGTCCAAAACCTGTTATTAAACAAGACACAAACACAATCCTAGGAAAAGGTTTTGAAGATGTGAAACAATTCTACACACTTGGTAAAGAATTGGGTCGAGGTCAATTTGGAGTAACATATCTATGTACTGAGAATTCAACAAAATTGCtttatgcttgtaaatcaattTCAAAAAGGAAACTTGTGAGTAAATCTGATAGAGAAGATATAAAAAGAGAAATTCAGATTATGCAACATTTAAGTGGTCAACCAAATATTGTTGAATTTAAAGGTGCTTATGAAGATAGAAATTCAGTTCATGTTGTTATGGAACTTTGTGCTGGTGGTGAACTTTTTGATAGGATTATTGCTAAAGGACATTATAGTGAAAAAGCAGCAGCTTCTATATGTAGACAGATTGTTAATGTTGttcatatttgtcattttatggGTGTTATGCATAGGGATCTCAAGCCAGAGAATTTCTTGTTGTCTAGTAAAGATGAAAATGCACTTCTTAAAGCAACTGATTTTGGTTTGTCTGTTTTTATTGAAGAagGAAAGGTGTACCGTGATATAGTTGGAAGTGCGTATTATGTTGCCCCAGAAGTTCTTCGTCGCAGATGCGGAAAAGAAATCGATATATGGAGTGCAGGAGTAATACTATATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCCGAGACTGAAAAGGGAATATTTGATGCCATATTGGAAGGTCATATTGATTTTGACAGTGATCCGTGGCCTAAAATATCGGATAGCGCCAAGGATCTTGTTCGTAAAATGCTTATACAGGATCCAAAGAAACGCATTACTTCTGCACAGGTTCTAGAGCATCCATGGATTAAAGGTGGAAATGCTTCTGATAAGCCAATAGACAGTGCAGTTCTTTCTAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCATTGAAGgtCATTGCTGAGAATATGTCTGAAGAAGAGATCCGAGGTTTGAAGGCGATGTTTACAAATATGGATACAGACAACAGTGGTACAATCACCTATGATGAACTAAAAGCAGGATTGCAAAGACTTGGCTCAAAGCTATCAGAGGCTGAAGTTAAACAACTTATGGAAGCTGTAAGCTATTCTTAA 1320 0.3538 MGCFLSKDKDSEPEHHNGYRYAESSGLRNNNHEQQVNQTRTPQPSTSSYQPQIPLKPSSISAPSPKPVIKQDTNTILGKGFEDVKQFYTLGKELGRGQFGVTYLCTENSTKLLYACKSISKRKLVSKSDREDIKREIQIMQHLSGQPNIVEFKGAYEDRNSVHVVMELCAGGELFDRIIAKGHYSEKAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFDSDPWPKISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKGGNASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSEEEIRGLKAMFTNMDTDNSGTITYDELKAGLQRLGSKLSEAEVKQLMEAVSYS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01293 439 Pfam Protein kinase domain 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01293 439 Pfam EF hand 393 419 IPR002048 GO:0005509
Tsu03g01293 439 SMART efh_1 392 420 IPR002048 GO:0005509
Tsu03g01293 439 MobiDBLite consensus disorder prediction 7 21 - -
Tsu03g01293 439 SMART serkin_6 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01293 439 ProSiteProfiles EF-hand calcium-binding domain profile. 388 423 IPR002048 GO:0005509
Tsu03g01293 439 SUPERFAMILY EF-hand 371 436 IPR011992 -
Tsu03g01293 439 Gene3D Transferase(Phosphotransferase) domain 1 174 352 - -
Tsu03g01293 439 MobiDBLite consensus disorder prediction 1 68 - -
Tsu03g01293 439 PANTHER SERINE/THREONINE-PROTEIN KINASE 47 436 - -
Tsu03g01293 439 SUPERFAMILY Protein kinase-like (PK-like) 87 364 IPR011009 -
Tsu03g01293 439 CDD STKc_CAMK 87 345 - -
Tsu03g01293 439 MobiDBLite consensus disorder prediction 23 68 - -
Tsu03g01293 439 Gene3D Phosphorylase Kinase; domain 1 90 173 - -
Tsu03g01293 439 Coils Coil 410 430 - -
Tsu03g01293 439 Gene3D - 353 438 - -
Tsu03g01293 439 ProSitePatterns EF-hand calcium-binding domain. 401 413 IPR018247 -
Tsu03g01293 439 CDD EFh 393 436 IPR002048 GO:0005509
Tsu03g01293 439 ProSiteProfiles Protein kinase domain profile. 88 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01293 439 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Tsu03g01293 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Tsu03g01293 439 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 47 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01293 Tsu-Chr3 12371210 12376389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01293 3 436 EF-hand Containing Proteins AT3G20410 73.121 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Tsu03g01293 Pkinase 2.8e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01293 K13412 - gmx:547888 726.472