Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01288 ATGCCCTCAGCTCAGGATCCATTCTACGTTGTCAAGTCCGAGATTCAAGAATCTATTGATACTCTGCAATCTACTTTTGAGCAATGGAAACGTACTTCTGATGCTGAAGAGCGAGTACAAGTTACAAAGGAGGTTCTTGCTGGATGTGAAAGCATAGAGTggcagGTGGATGAATTGGAAAAAGCAATTGCTGTTGCTTCTAGAGAACCTTCTTGGTATGGCATTGATGACGTGGAGATTGAAAATCGGAGGAGATGGACAAGCAGTGCTCGTACTCAGGTTGGCACAGTGAAGAAATCAGTCGATGCTGGAAAGAGCTCAAGTACAACAAGCATTAATGGGATGCATCGAGAACTAATGAGGCTACCGGATTCCTATCAACCTTATTCATCCAACCAGAATGCTgccaatgataatgatgatttcATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGCAACAGGACGAGGAGTTAGATGAACTTAGTTTAAGTGTGCAAAGAATTGGAGGCGTTGGACTCACGATACATGAAGAACTCCTTGCACAGGAAAAGATTTTAGATGATCTGGGTAACGAGATGGACAGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTTGCAATGGTTATGAAGAAAGCTAGCGCGAAAGGCCAGATCATGATGATATTAGCCTTGTTGGCTCTattcattttcctatttttcttAGTCTTCTTAACCTAG 732 0.3907 MPSAQDPFYVVKSEIQESIDTLQSTFEQWKRTSDAEERVQVTKEVLAGCESIEWQVDELEKAIAVASREPSWYGIDDVEIENRRRWTSSARTQVGTVKKSVDAGKSSSTTSINGMHRELMRLPDSYQPYSSNQNAANDNDDFIQSESDRQMLLIKQQDEELDELSLSVQRIGGVGLTIHEELLAQEKILDDLGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILALLALFIFLFFLVFLT 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01288 243 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 151 213 IPR000727 -
Tsu03g01288 243 Coils Coil 49 69 - -
Tsu03g01288 243 Gene3D - 158 222 - -
Tsu03g01288 243 PANTHER SYNTAXIN 1 242 IPR045242 -
Tsu03g01288 243 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Tsu03g01288 243 SMART tSNARE_6 146 213 IPR000727 -
Tsu03g01288 243 Pfam SNARE domain 188 239 IPR000727 -
Tsu03g01288 243 CDD SNARE_Qc 154 211 - -
Tsu03g01288 243 PANTHER SYNTAXIN PROTEIN 1 242 - -
Tsu03g01288 243 SUPERFAMILY SNARE fusion complex 149 213 - -
Tsu03g01288 243 Coils Coil 189 209 - -
Tsu03g01288 243 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Tsu03g01288 243 Gene3D - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01288 Tsu-Chr3 12303369 12306407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01288 55 243 SNARE and Associated Proteins AT1G28490 68.947 6.91e-90 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01288 K08500 - gmx:100793612 352.829