Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01285 ATGTTTTCCACCACTCTCACAAATGGGTTCCCCTCAAAATCCAACCTTTCTCAAAAAACCCGTTTCCCCCAATTCCAAATCCGCTCCGGAATCCGCGAAATCCGAGAACGAATCAACTCCGTCAAAACCACCCAAAAAATCACCGAAGCAATGAAACTAGTCGCCGCCGCCAGAGTCCGCCGTGCACAAGAAGCCGTAATCAGCGGCCGACCTTTCTCCGAAGCCTTCGCCGAAGTCCTCCATAACATCAACCAAAATCTCCAAAACGACGACGTTGAAGTCCCTTTAACCGCGGTTCGACCGGTAAAAAACGTTGCCTTAGTTGTTATCACCGGTGACCGTGGCTTATGCGGCGGTTTTAATAATACCGTTGCGAAAAAAGCGGAAGCAAGAGTTCATGAATTGAAGAAATTAGGTATAGGTTGTGTTGTTATAAGTGTTGGTAAAAAGGGTAATTCTTATTTCAAACGTAGGAGTTTTGTTGAAGTTGatagattcattgaaaattcCGGTTTTCCGACAACAAAAGATGCTCAAATTATTGCTGATGATGTTTTTTCATTGTTTGTTAGTGAAGAAGTTGATAAAGTTGAACTTGTTTATACAAAATTTGTATCTTTAGTTAGGTTTAATCCAGTGATTCAAACATTGTTACCATTATCTAAAAAAGGTGAAGTTTTTGATGTTAATGGGAACTGTGTTGATGCAATGGAAGATGAGTTTTTTAGGTTAACTTCAAAAGATGGAAAATTGGCATTGAAAAGAGATACTTTTGTtgtgaagaagaaaatgaatgatGGGTGTGTTCCACTTATGGAATTTGAGCAAGATCCTGCTCAGATTCTTGATGCGATGATGCCGCTTTATTTGAATAGTCAAGTTTTGAAAGCATTGCAAGAATCATTGGCTAGTGAACTTGCTGCTAGAATGGGTGCTATGTCGAATGCAACTGATAATGCTGTTGAGTTGACGAAAGAGCTTTCTGTTGCTTATAATAGAGAAAGACAAGCTAAGATTACTGGTGAGATTTTGGAGATTGTGGCTGGAGCTGAGGCGTTGAAACCGATtgattga 1074 0.3883 MFSTTLTNGFPSKSNLSQKTRFPQFQIRSGIREIRERINSVKTTQKITEAMKLVAAARVRRAQEAVISGRPFSEAFAEVLHNINQNLQNDDVEVPLTAVRPVKNVALVVITGDRGLCGGFNNTVAKKAEARVHELKKLGIGCVVISVGKKGNSYFKRRSFVEVDRFIENSGFPTTKDAQIIADDVFSLFVSEEVDKVELVYTKFVSLVRFNPVIQTLLPLSKKGEVFDVNGNCVDAMEDEFFRLTSKDGKLALKRDTFVVKKKMNDGCVPLMEFEQDPAQILDAMMPLYLNSQVLKALQESLASELAARMGAMSNATDNAVELTKELSVAYNRERQAKITGEILEIVAGAEALKPID 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01285 357 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 30 353 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PRINTS ATP synthase gamma subunit signature 331 352 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PRINTS ATP synthase gamma subunit signature 300 319 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PRINTS ATP synthase gamma subunit signature 102 121 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PRINTS ATP synthase gamma subunit signature 195 212 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 CDD F1-ATPase_gamma 31 350 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 Gene3D ATP synthase, gamma subunit, helix hairpin domain 255 353 - -
Tsu03g01285 357 Gene3D - 97 222 - -
Tsu03g01285 357 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 30 353 IPR035968 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PANTHER F0F1 ATP SYNTHASE SUBUNIT GAMMA 23 357 - -
Tsu03g01285 357 Pfam ATP synthase 31 353 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 PANTHER ATP SYNTHASE GAMMA CHAIN 23 357 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 Gene3D ATP synthase, gamma subunit, helix hairpin domain 30 96 - -
Tsu03g01285 357 Hamap ATP synthase gamma chain [atpG]. 28 353 IPR000131 GO:0015986|GO:0045261|GO:0046933
Tsu03g01285 357 ProSitePatterns ATP synthase gamma subunit signature. 339 352 IPR023632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01285 Tsu-Chr3 12281652 12282983 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01285 12 354 Primary Pumps ATPases AT1G15700 71.802 1.43e-178 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01285 K02115 - qsu:112000322 471.855