Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01283 ATGGAACATATGAACAATATTGGTAATGGAGTGAATGATCAAAATGGATTGTTTGGTATGATGGAAAGAGGAGGTGGCGATGACGGAGAAGGTAGTGGTGGTAGCGGTGGTGGAGGTGGCGGTGATGAGGTGAGTATGAAAAAGGGTCCTTGGACAACAAATGAGGATGCAATTTTGATAGATTATGTGACAAAACATGGTGAAGGAAATTGGAATGCAGTTCAAAGAAATACAGGTTTGAATCGTTGTGGGAAGAGTTGTAGGCTTAGATGGGCTAATCATTTAAAACCCAATTTGAAAAAAGGTGCATTTTCTCATGAAGAAGAGAAACTTATTGTTGAACTTCATGCTCAATTTGGGAATAAATGGGCTAGAATGGCAACTTCGTTACCTGGAAGAACGgacaatgaaataaaaaattactggAATACAAGGATCAAACGTCGTCAAAGACAAGGTCTTTCTTTATATTCAGACGACCATAATCGTGCCAACACACCAACCACACCAACAACACCTTCACAATGTGTCACTCCGAATGGATCAAACCCTCACAACATTACAACGAAATTTGAGTTTTTCAATCAAAACCAACACcaatatcaacaacaacaccatCAACACCTTCCTTTATCTCCAACATCAACCCATCATCATTCTCCTCTCTCTTCACCACTCCAACATagacaacaacatcaacaacaatctTATTCTCCTCGCACTTTCTTAGACACTTCACCTGCACCATTGTCATCTTCTTCACAACTCTCCTTCACTTTCCAAAGACCCGCGCCACTCTTATCAGCCCCTCTTCGCCTCAAACGATTCCGTTCGAGTCCAAACTTCAGCCTTCAAGTCCCTAATTCCATGACACAAAATTGCTCCTCCTCAATCCATGATCCTTCTTTAACCTCACACCATGATAGTAATTTTAGGTTCCCAATTCATTACAACTCAAGTTTCCCTCAATATTTCCATACTCCGTTGTTGGAATCCGATCGAGGAGTTTCTTCGTCTTCGCCTTTCTCAACAAAGTTGGAGCTACCTTCAAACCAATATTCAAGATTATCCTCAGAACAAGATGTTAAGGCTAATAATATTGAGTTTAATAATGATCCTAATTCTTTTCAAAACAATAATAGTGGCTTGATGGGAGATCTTTTAATGGATGCACAAACTTTGGCATGTGGACAAAATTCAAAGAAGAGAAGTTACTTGAGCTTAAATGAAGGAAATGACATGTTTAATGGATGTCAAAGTTATGATGATTTCCCACTTAACTCTCTTTATTGGTCTTCTAATTCAGAACAAAAACCAAAAGAAGAAGCACAAGACCTAACTAAATTCTTGAATGATGACATGTCAACAATGCTAAGTGTGATGCCTTCTTCCACAATACAAAATCAAGATTGGAATAACAATGGATCAGATCAAGTCTCTAATGTTCAATCTCCTAATGGTGTGAATATGGTAGATGAAAATTTTGGACTCGATATTAAACCTATAGCTTCATTGTTTCCTCTCACAAACACAACAGAtcataataatgaaaataatgatTGCTACACTTGGGATAATTTATCTGGACTATGTTAA 1596 0.3634 MEHMNNIGNGVNDQNGLFGMMERGGGDDGEGSGGSGGGGGGDEVSMKKGPWTTNEDAILIDYVTKHGEGNWNAVQRNTGLNRCGKSCRLRWANHLKPNLKKGAFSHEEEKLIVELHAQFGNKWARMATSLPGRTDNEIKNYWNTRIKRRQRQGLSLYSDDHNRANTPTTPTTPSQCVTPNGSNPHNITTKFEFFNQNQHQYQQQHHQHLPLSPTSTHHHSPLSSPLQHRQQHQQQSYSPRTFLDTSPAPLSSSSQLSFTFQRPAPLLSAPLRLKRFRSSPNFSLQVPNSMTQNCSSSIHDPSLTSHHDSNFRFPIHYNSSFPQYFHTPLLESDRGVSSSSPFSTKLELPSNQYSRLSSEQDVKANNIEFNNDPNSFQNNNSGLMGDLLMDAQTLACGQNSKKRSYLSLNEGNDMFNGCQSYDDFPLNSLYWSSNSEQKPKEEAQDLTKFLNDDMSTMLSVMPSSTIQNQDWNNNGSDQVSNVQSPNGVNMVDENFGLDIKPIASLFPLTNTTDHNNENNDCYTWDNLSGLC 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01283 531 MobiDBLite consensus disorder prediction 336 356 - -
Tsu03g01283 531 Pfam Myb-like DNA-binding domain 101 144 IPR001005 -
Tsu03g01283 531 Pfam Myb-like DNA-binding domain 48 95 IPR001005 -
Tsu03g01283 531 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 150 IPR017930 -
Tsu03g01283 531 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 526 - -
Tsu03g01283 531 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 20 526 - -
Tsu03g01283 531 MobiDBLite consensus disorder prediction 152 255 - -
Tsu03g01283 531 MobiDBLite consensus disorder prediction 1 50 - -
Tsu03g01283 531 ProSiteProfiles Myb-like domain profile. 96 146 IPR001005 -
Tsu03g01283 531 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 95 IPR017930 -
Tsu03g01283 531 SUPERFAMILY Homeodomain-like 45 142 IPR009057 -
Tsu03g01283 531 CDD SANT 50 95 IPR001005 -
Tsu03g01283 531 ProSiteProfiles Myb-like domain profile. 43 95 IPR001005 -
Tsu03g01283 531 CDD SANT 103 144 IPR001005 -
Tsu03g01283 531 SMART sant 100 148 IPR001005 -
Tsu03g01283 531 SMART sant 47 97 IPR001005 -
Tsu03g01283 531 Gene3D - 103 149 - -
Tsu03g01283 531 Gene3D - 47 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01283 Tsu-Chr3 12259054 12266821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01283 20 224 MYB Transcription Factor Family AT4G26930 50.909 1.98e-62 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu03g01283 Myb_DNA-binding 7.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01283 - - lja:Lj6g3v0869180.1 595.89