Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01271 ATGATTAATTCGGCTAAGGAACCTGTTTTGACACTTTGTGGTCATTTATTTTGTTGGCCATGTTTGTATAAATGGTTGTATTTAAGATCTTCTGGAATCAAAGATTGTCCTGTTTGTAAGGGACAAGTTAGTGATAAGAATGTTATTCCTATGTATGGTGGTGGCGGGGATCGTGATAAGATTCGTAATGAGGATTCGAGCTCTGGTACTTGTAAAATCCCTTGTAGACCTAATGCAAAGCGTGTCTCGATGGATCTTGAAGCGATGTAA 270 0.3852 MINSAKEPVLTLCGHLFCWPCLYKWLYLRSSGIKDCPVCKGQVSDKNVIPMYGGGGDRDKIRNEDSSSGTCKIPCRPNAKRVSMDLEAM 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01271 89 PANTHER OS01G0830200 PROTEIN 5 83 - -
Tsu03g01271 89 ProSiteProfiles Zinc finger RING-type profile. 13 40 IPR001841 -
Tsu03g01271 89 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 51 IPR013083 -
Tsu03g01271 89 SUPERFAMILY RING/U-box 7 46 - -
Tsu03g01271 89 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 83 IPR045103 GO:0005783|GO:0006511|GO:0061630
Tsu03g01271 89 Pfam Ring finger domain 6 40 IPR001841 -
Tsu03g01271 89 ProSitePatterns Zinc finger RING-type signature. 13 22 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01271 Tsu-Chr3 12177883 12178748 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01271 2 82 C3H Transcription Factor Family AT3G58030 50.617 9.26e-25 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01271 K10666 - ming:122087984 102.449