Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01257 ATGGCAGATGTGACTGCGAATATAATTGCGATTGTTGTGGCCGTTGCAACCGCGGCTATATATTTGGCAAGACCTACCCTTTGGCAATATCTTTTCCCCAAGCAAATGATAAAGGCAATGGGAAAATTCATTGGCAATATTCAACCATTTTCTCGTCTTGATTCGCTACCAGGTATTCAGTATGAGGCTGCAATTGCATCTAAAGACTTCACTTATTTTGAATCAACAAAAAAGGCTTATGATGAACTCTTTGAGGCACTGAAGGATGACTCCATCCATATGATAGGTTTGTATGGAGAGGGTGGATGTGGAAAAACAAGTCTTGTAACTCAGGTTGGCAAGCAGGCTGAGGAACAGAAAATATTTGATAAGGTTATATTAATCACTGTGACTCAAACTCCAAATATTAGAGACATTCAAGAAGAAATTGCGGATATGTTAAAATTGAAACTGAAGCAAACAAGTGTAAAGGGAAGAGCACAACAGTTATGGATGagtttaaaagaaaagaagagaattCTTATAATAGGTGACAGTTTACGGAGAGAGTTCAAAATGGAGGATATTGGGATTTTATTAGATGACGATGATATCAAGAAAACATGGAAGATCCTAATAACCACTTGTAACAAGCGTGTTTTTCTAACAATGGACTGTCAAAAGCAGATTGATTTAGAGCTCTTGTCTGAAGATGAGTCTTGGAATTTATTCCAAAAGTGTGCAAAAATTGACGATGAAGACTCCACCATATTGAAAGACGTGCCACGAAAAATATGCAAAGAATGTAAGCGACTTCCAATAGCAATAAAAATTGTGGGGTCATTATTCAAAGGAAGGAATGAAATTGAGTGGCAGCAGGCGTATGAGAAGTTAATGGCTTCAAAGGCATCTGATGATGAAGATAATGCTACTCTTGGCATTAAATTTAGCTATGATCATTTGTCACAAAAAGCAAAGGAAATCTTTCTATTGTGTGCTCTTTTTCCAGCAGAAAAGCACACCCCAACAGAAGATTTGGTGAGGTATGCACTTGGACTAGGTGATAAAGAAATATCATCGTTAAAGTCAATGAGGAGCTCCATCGGCGCAGTTGTAAAAGACCTTCTAGATTCTTGTTTGCTGACACGTGGTTCTGTGAAGATGCATACCATGGTTCGTGATGCAGCCTTATGGATTGCAAATAGATCAGATGATTGCAAAATGTTGGTAAATGTTGACAAACCGCTTAGCACAGTGGCAGAAGATAACAATATAAGAGATTGTTTTGCCCTATCTTCATGGTGGTTTAATGAAAGTCCCTTTTTTTGTCAATTGCATGCTCCAAATCTTAAAATGCTATTGGTAAATATAAGTGCTCATAGTTCATTGAATTCCTTGGATTTATCACCTTTAACATTTGAAGGAATACAAGGGCTTCAGGTATTCTCTCTGACCATCAATTACAAAATAGTACCAATATCATTTCCTCCATCAATCCAACTGTTGACAAATGTTCGAACTCTGCGCTTAAATGGATTGATGCTTGGTGACATTTCTTTCATTGCAAGCTTAACAAGTCTAGAGATTCTTGACTTGCGACGTTGTTACTTCAACGAACTTCCTATTGAAATAGGAAAGCTCGAAAGCTTGAAGCTGATAGATTTGTCAGAATGTCATATTTCAGAAAACAACTATAATGGAGTGTTACGTAAATGTTCACAGCTAGAAGAGTTGTATGCTTTACCATGCTACCCAGAAGCAAATGTTCCAAACATCATTATTGACACTGATATTCTTCCAAAGTTGCAGAGATTTGTACTAACTCATTCATACtttccaaaaaagaaaatatttactgAGCTTAAGAATTCAAATATCTCCCAGTTGAAGGGGTCCAAAATGAATATTCTGCAAATGTCTGAAACTATTTCTTTGACAGGCCTCCATGGAGGATGTAACAATATCATTCCAGATATGGTAGGAAGCTTGAATAATTTGTCTACTTTCCATCTTACAGAATGCAAAGAGATAAAATGCATCGTTGATGCAACCTGTGATTTGAAGGAAGATGATTTGATTCCCAGGTTGGTTGAGTTATGCCTTAAATCTTTGGATAACTTGACAGAACTGTGTCATGGTTCACCTCTGCAAGTATTACACTACTTTGAGAAACTAGAAGTACTTGACGTATATAATTGCCCGCAATTATACATCATATTTCCAAGGCAATGTAACTTGAGAAATCTTAAGATTCTCAGCTTATCATATTGCAGGACCGATGAAGTACTCTTCTCAGAATCTGTTGCTCAAAGTCTGCAGCAACTAGAACAGCTAACAATAAAAGGTTCTCAGGAACTGAAGCATTTAATTGAATGccccttaaaaaaaaagaagcatttAATTGCTGCAAGTGGAAGCGAACATGATGGTTGTAGTACAAGTGAGGAAATAGTTCCAGCTCCCATGAATTTGATTACCAATCTAAGGGACGTCACCATTCATAATTGTCAAAGTTTAGAGTCGATATTCCCTCTTTGTTATGTCGAAGGACTTCCACGATtgcaaatgataaaaatatcatattctcCTAAGCTGAAATATGTGTTTGGTAAATGTGATCACGAACACCTTTCATCACACCAAAACCTGAACCAAGTCACGCTTCCTCATTTGGAAGTTCTAAAACTGGGAAGTTATCTTAACAATTTCAGTGGGATGTGTCCAGCGAATTATCAAACAAACTGGCTATCTCAGTCTCTGAGGATACTAACCATAGGGACTTTTCCAAATGTGGCAATACCATGGTTCAATTTGAATGTTGGCTATGATCAGAGACAACATCCTCTGAATGAAATTTGGAGTTTCCAGTGTCTTGAGCGTTTAACAGTGGGTCATTGTGaacaattgaaatatttattctcCATCGAATCACATAGAAGCCTACCAGAGTTGATGTACCTTTCCATTTCTCATTGTCAAGAATTGGAACAAATTGTTGCAGAAAATGAAGAACTTGTGCAGCTTCCTAATGCTGAATCGTATTTTCCAAAGCTAAAAGATATATCAGTCTATAACTGCAACAATTTGAAAAGCCTTTTCCCAAATAAAGTACTTGGGCAGCTTCCTAATGCTGAATCGGTTTTTCCAATGCTAAAAAATATATCAGTCCGTGACTGCGACAATTTGAAAAGCCTTTTCCCTCTTTCCATGGTTACAATGCTTCCACAATTAAGCACTCTTCACTTAACAGGTTCTACTCAACTTCAAGTGGTTTTTACACATAGTCAAGGAGACGGCATTATGAACGAAATAGAAATTATTCTTCCGAACTTGACAGATTTAGCATTGGCCAATCTACCAAATTTTGTAGATATCTGTCATGGTTCTAAGTTACATGCCGTTAAACTTCAAAGACTCGGCATATTTAACTGCCCCAAAACTGCTTCAAGCTTAAGAATAATTGAGGATCAAATTGAAGAACCATTAGATGCATTAGATGATTATCCTGATCCGTACCCAACTTCTAGCATAAGTAATGACGTGGAAGACTTCATTTATTTTGAATCAACAGAAGTGGCTTATAATCAACTCTTAGAGGCACTTAAGGATGATTATATCTCTACAATAGGAGTGTATGGAAAGGGTGGATGTGGAAAAACAACTCTTGTAACAGAAGTTGGCAAGATGGTTGAGGAATTAGATATGTTTGAGAAGGTTATATCAATCACTGTGTCTCGGGCTCCAGACATCAGAGGCATTCAAGGAAAAATTGCAGATATGTTAAACTTGAAACTGGGGGAAGAAAGTAAAGAGGAAAGAGCACAACATTTATGGACGTGTttaaaagagaagaagagaattcTTATCATAGTAGACGATCTATGGAGTAAGTCTCATTTGATGGATATTGGGATTCGCTTAGACGATGTTGTTATGGAGATAACTTTGAAGATCCTCATAACCACTCGTCACGAGCGTGTTTGTAGATCAATAGATTTTCAAAAGAAGATTCATTTGGAGCTCTTGTCTGAAGACGAGTCTTGGAACTTATTCCAAAAGTTTGCAAGAATTGATGACGAAGACTCCAAGATATTGAATGATGTGCCTCGAGAAATATGCAAAGAATGTATGGGACTTCCCATAGCAATCAAAATTGTGGGTTCATTATTCAAAGGAAGGAATGAAATTGAGTGGCAGCAGGCGTTTGAGAAGTTGAGGGATTCAAAGGCATACGAAGGAGGAGAGAATGTTAAATTAAGCGATGATGATTTGCCAGGCAAAGAAGCACAACAAATCTTTCGACTGTGTTctctttttctagaaaaatATGACACTCCAACAGAAGATTTGGTGAGGTATGCACATGGACTAGGTGAGGAAGAAATATCATCGTTAAAGTCAATGAGGAGCTCGATCATAGCAGATCAAGTAGACAAACTTCTAGATTCTTGTTTGCAGATGAGATGGCGTGAACCATTAGAACACGCAACTTTGCATGGGACaaagttaaaacaaaagaaatttgaaACAATGAATATGGATTTGGCTGTTGATAAGGATGAAATTGAAGAAGCAGAGTATAACCAAGAACCATTCATGCCCCTCTTCAATAATTCAAAAGAGCATCACAACCCTCCATATTATAGTTTCTACCTAGAAACAATTATTGAAGAAGGGGTTCAAGCCTGCAAACATAGCATTCTTGGTAAAATCATAACAGACAAATATGTTCATATTAGCTCCATTCAAAATGGCCTTGAGAGCATATGGGGATCTCCACCAGGATTAAAGATTCAAGAAATTGAGGGAAAGATTCTACAATTCTTTATGAACAATGAGGCTGACCAAGATCGTATCCTCAAAGGTAACCCCTTGATCTTTAGGAATTCTTGGCTGATTGTGAAGCCTTGGGATAGGGAGACTGACCCTAGAACTCTAGATTTTGATCATGTTCTAATCTGGATCCAGTTATGGGGACTGCCATCCCACTGCAAAACAAAGGCTATGGGGAAGCACTTAGGGTCTCTAATGGGGGATGTGGAGGCCTCTGAAATCTATGAATACCCGGGGAAGCAGATGATTATAAAAATTAAGGTGGCCATAAACGTACACAAACCAATACCCTATGGAATTCATGTGGGCAACCCCACTGATGGTGTATGCTGGATTGACTACAGGTATGAAAAATTGCCTCAAATGTGCTTTAACTGTGGCTTAGTTGGCCATGCTGCTAACCTATGTAGAAATCCAGCCCTTGAGCAAGACACTTTAGCTCCCCTAGGGCCATGGATCAGATCCACACAATATGGCAAAAGGAAGATGGAAGACAAAGATAGGAAATTCTACAGCAACCCCTCCCAATCACCTAACTTTGGAAAGTACAGCCCAAAGGTGCCAGCCTCTCTAGCAGCTCAGTTGGCAGCCATGAAACTACAGACTCAAAACcaaaaagagaagaacaaaAGTGATGTACAAACTGACCAGCAAAAACACACACAGGATGGTGGTGAGAACACAAGGCAGAGGGGCATGCAACTAGCcacagaaaaaggaaaaagtgtTCCAAATATGGGAGCCCAACAAGTGTTTTATCAAGGTACAAACAGCAATGGAAAATTTGAGGCAGACCCAACAAAACAGGTGAAGAGACTGAAGTTAGCCTATGAAACCAGCAACGAAGACAAAGACAACATGGATACCCAGATATTGGCAGCGAGAGCTCTACAGAAGCTCATTGCTGCCAATCATCCTGACCTCATTTTTCTTATGGAAACCAAGATGCACAACATTTCCACCCAGTTTAAGGCTAAGTTTGCTGCTACTTACAGCTTATACTCTATTGATTGTCTTTTGAATGGGGAAAGGGGTAAATCTGGGGGTCCTAAGAAGGTTCCACCTAAAGCTAGACCAACCAGATATCAACAAGTTTGGACAAGAGATGAAGGCCATGTACAGATTGTTAAAGAAGCTTGGTTAACCAATAGAGGATCTATAACCCAAAGGCTTAGCAAAACTCTCTCTACCCTCCACAAATGGGGAAATCAAAAGTTTGGNGCTTGGTTAACCAACAGAGGATCTATAACCCAAAGGCTTAGCAAAACTCTCTCTACCCTCCACAAATGGGGAAATCAAAAGTTTGGGGTGGTACCTAGACGAATTAAAACGATACAGGGGGAGCTAAATCATCTAAATGAGCAACATGGTATACATGATCTGACTGATCAAATCAAATGTAAAGAAAAGGAGTTGGATGAGATTCTGGAAAGTGAAGAAATGTGGTGGAATCAAAGCCCCAACCAGAGTGCATTCATTCAAGGGAGACTTATAACTGATAATACCCTCATTGCTTCTGACATTTTTCATTACTTATCCCATACAAAGAGGAAGAATGGCTTTGTGGGTATTAAGACTGACATGGCAAAAGCTTATGATAGAGTAGAATGGGACTTCCTAGAGGCAACCTTGACTACCATGGGCTTCCCTATTCCCCTGGTTCAAACTATTATAAAGTGTGTAACTACTGTTAAGTTTTCCATTCTCATCAATGGCCATCCCTCTCAGGAATTCTACCCTCACAGGGGTCTTAGACAGGAAAATCCCCTATCCCCTTATCTCTTTATCATTTGTGCTGACGTTTTATCTGGCCTAATCTCTAAAgctcaaaaaaatcatttgatccATGGGGTAAAAATAGCCCCTGGGGCTCCAGAGATTAGCCACCTGTTTTTTGCTGATGACAGTTTGATGTTTTGCAGGGCAACCACTGAGGAAGCCTCTGCCATCCACAATATTATACATACTTATCAAAGGGCTTCAGGGCATCTGGTAAACTTTAACAAATCTGAGATGGTCTTCAGCAATGGGCTAACTACTGATCTACAGAGGGATATTGCAAACATTTTACCTATGCAGATAAAGAATCAGTTCTCTAAATACCTGGGGATGCCAACAGTGGTAGGTAGATGCAAAAATCAAGTTTTTAATTTCATACAGGAGAAGATCTGGATAAAGCTCAAAGGGTGGAAGGAAAAAATCTATCTTTTGCTGGAAGAGGAACCTTGA 7041 0.3793 MADVTANIIAIVVAVATAAIYLARPTLWQYLFPKQMIKAMGKFIGNIQPFSRLDSLPGIQYEAAIASKDFTYFESTKKAYDELFEALKDDSIHMIGLYGEGGCGKTSLVTQVGKQAEEQKIFDKVILITVTQTPNIRDIQEEIADMLKLKLKQTSVKGRAQQLWMSLKEKKRILIIGDSLRREFKMEDIGILLDDDDIKKTWKILITTCNKRVFLTMDCQKQIDLELLSEDESWNLFQKCAKIDDEDSTILKDVPRKICKECKRLPIAIKIVGSLFKGRNEIEWQQAYEKLMASKASDDEDNATLGIKFSYDHLSQKAKEIFLLCALFPAEKHTPTEDLVRYALGLGDKEISSLKSMRSSIGAVVKDLLDSCLLTRGSVKMHTMVRDAALWIANRSDDCKMLVNVDKPLSTVAEDNNIRDCFALSSWWFNESPFFCQLHAPNLKMLLVNISAHSSLNSLDLSPLTFEGIQGLQVFSLTINYKIVPISFPPSIQLLTNVRTLRLNGLMLGDISFIASLTSLEILDLRRCYFNELPIEIGKLESLKLIDLSECHISENNYNGVLRKCSQLEELYALPCYPEANVPNIIIDTDILPKLQRFVLTHSYFPKKKIFTELKNSNISQLKGSKMNILQMSETISLTGLHGGCNNIIPDMVGSLNNLSTFHLTECKEIKCIVDATCDLKEDDLIPRLVELCLKSLDNLTELCHGSPLQVLHYFEKLEVLDVYNCPQLYIIFPRQCNLRNLKILSLSYCRTDEVLFSESVAQSLQQLEQLTIKGSQELKHLIECPLKKKKHLIAASGSEHDGCSTSEEIVPAPMNLITNLRDVTIHNCQSLESIFPLCYVEGLPRLQMIKISYSPKLKYVFGKCDHEHLSSHQNLNQVTLPHLEVLKLGSYLNNFSGMCPANYQTNWLSQSLRILTIGTFPNVAIPWFNLNVGYDQRQHPLNEIWSFQCLERLTVGHCEQLKYLFSIESHRSLPELMYLSISHCQELEQIVAENEELVQLPNAESYFPKLKDISVYNCNNLKSLFPNKVLGQLPNAESVFPMLKNISVRDCDNLKSLFPLSMVTMLPQLSTLHLTGSTQLQVVFTHSQGDGIMNEIEIILPNLTDLALANLPNFVDICHGSKLHAVKLQRLGIFNCPKTASSLRIIEDQIEEPLDALDDYPDPYPTSSISNDVEDFIYFESTEVAYNQLLEALKDDYISTIGVYGKGGCGKTTLVTEVGKMVEELDMFEKVISITVSRAPDIRGIQGKIADMLNLKLGEESKEERAQHLWTCLKEKKRILIIVDDLWSKSHLMDIGIRLDDVVMEITLKILITTRHERVCRSIDFQKKIHLELLSEDESWNLFQKFARIDDEDSKILNDVPREICKECMGLPIAIKIVGSLFKGRNEIEWQQAFEKLRDSKAYEGGENVKLSDDDLPGKEAQQIFRLCSLFLEKYDTPTEDLVRYAHGLGEEEISSLKSMRSSIIADQVDKLLDSCLQMRWREPLEHATLHGTKLKQKKFETMNMDLAVDKDEIEEAEYNQEPFMPLFNNSKEHHNPPYYSFYLETIIEEGVQACKHSILGKIITDKYVHISSIQNGLESIWGSPPGLKIQEIEGKILQFFMNNEADQDRILKGNPLIFRNSWLIVKPWDRETDPRTLDFDHVLIWIQLWGLPSHCKTKAMGKHLGSLMGDVEASEIYEYPGKQMIIKIKVAINVHKPIPYGIHVGNPTDGVCWIDYRYEKLPQMCFNCGLVGHAANLCRNPALEQDTLAPLGPWIRSTQYGKRKMEDKDRKFYSNPSQSPNFGKYSPKVPASLAAQLAAMKLQTQNQKEKNKSDVQTDQQKHTQDGGENTRQRGMQLATEKGKSVPNMGAQQVFYQGTNSNGKFEADPTKQVKRLKLAYETSNEDKDNMDTQILAARALQKLIAANHPDLIFLMETKMHNISTQFKAKFAATYSLYSIDCLLNGERGKSGGPKKVPPKARPTRYQQVWTRDEGHVQIVKEAWLTNRGSITQRLSKTLSTLHKWGNQKFXAWLTNRGSITQRLSKTLSTLHKWGNQKFGVVPRRIKTIQGELNHLNEQHGIHDLTDQIKCKEKELDEILESEEMWWNQSPNQSAFIQGRLITDNTLIASDIFHYLSHTKRKNGFVGIKTDMAKAYDRVEWDFLEATLTTMGFPIPLVQTIIKCVTTVKFSILINGHPSQEFYPHRGLRQENPLSPYLFIICADVLSGLISKAQKNHLIHGVKIAPGAPEISHLFFADDSLMFCRATTEEASAIHNIIHTYQRASGHLVNFNKSEMVFSNGLTTDLQRDIANILPMQIKNQFSKYLGMPTVVGRCKNQVFNFIQEKIWIKLKGWKEKIYLLLEEEP 2346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01257 2346 CDD RT_nLTR_like 2088 2309 - -
Tsu03g01257 2346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 325 IPR027417 -
Tsu03g01257 2346 MobiDBLite consensus disorder prediction 1809 1830 - -
Tsu03g01257 2346 MobiDBLite consensus disorder prediction 1767 1841 - -
Tsu03g01257 2346 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 1166 1465 - -
Tsu03g01257 2346 PANTHER DISEASE RESISTANCE RPS5-LIKE PROTEIN 64 998 - -
Tsu03g01257 2346 SUPERFAMILY RNI-like 704 1139 - -
Tsu03g01257 2346 SMART AAA_5 1198 1331 IPR003593 -
Tsu03g01257 2346 SMART AAA_5 91 227 IPR003593 -
Tsu03g01257 2346 Gene3D - 1166 1331 IPR027417 -
Tsu03g01257 2346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1173 1429 IPR027417 -
Tsu03g01257 2346 PRINTS Disease resistance protein signature 166 180 - -
Tsu03g01257 2346 PRINTS Disease resistance protein signature 262 276 - -
Tsu03g01257 2346 PRINTS Disease resistance protein signature 94 109 - -
Tsu03g01257 2346 PRINTS Disease resistance protein signature 538 554 - -
Tsu03g01257 2346 Gene3D - 1334 1417 IPR042197 -
Tsu03g01257 2346 Gene3D - 227 315 IPR042197 -
Tsu03g01257 2346 Gene3D - 61 226 IPR027417 -
Tsu03g01257 2346 Coils Coil 2062 2082 - -
Tsu03g01257 2346 Pfam Domain of unknown function (DUF4283) 1549 1677 IPR025558 -
Tsu03g01257 2346 PANTHER - 1166 1465 - -
Tsu03g01257 2346 PANTHER - 64 998 - -
Tsu03g01257 2346 Gene3D Ribonuclease Inhibitor 416 579 IPR032675 -
Tsu03g01257 2346 ProSiteProfiles Zinc finger CCHC-type profile. 1727 1742 IPR001878 GO:0003676|GO:0008270
Tsu03g01257 2346 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 2086 2308 IPR000477 -
Tsu03g01257 2346 Gene3D Ribonuclease Inhibitor 646 997 IPR032675 -
Tsu03g01257 2346 Pfam Zinc knuckle 1697 1741 IPR025836 -
Tsu03g01257 2346 SUPERFAMILY L domain-like 380 788 - -
Tsu03g01257 2346 Pfam NB-ARC domain 79 310 IPR002182 GO:0043531
Tsu03g01257 2346 Pfam NB-ARC domain 1188 1403 IPR002182 GO:0043531
Tsu03g01257 2346 Gene3D Ribonuclease Inhibitor 1026 1153 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01257 Tsu-Chr3 11944866 11955844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01257 92 395 WRKY Transcription Factor Family AT5G45050 27.619 2.14e-10 64.7