Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01243 ATGTTGTGGAAAGAAATGGAAGTCGGACTAGCATCATTTTATTTCGATCACTCGGAGGTTTCAAATGCAGACGCTTCTGCCGAGGCCGAGGAAAAGTTGAAAGAAGTTTGTGAACATGATAATATATTGAATGAAGAAATTGGAATATACTGCACTAGATGTGGCTTTGTGACCACTCATATCAGAGATATTAATCCAATCTTTGTTGATAAGGCAGTGTGGCGCCAAGATGAGAAGGCGTGTGATGAAGGAGAAAATAAAGAAGAGCCTAACATGGCTGATGAAGATGATTATTTCCGTTTATTCCCAACTGATGCTAATCCTGAAGAACCGATATCGAAAGAAAACGAAAGCGTTTGGTCATTAATTCCTGAAATCAAAGAAAAGTTGCATGTGCACCATAAGAAAGCTTTTGAGTTTCTTTGGCAAAACATTGCAGGGTCAACGAATCCAGGACTAATTGAAGCCGAATCCAAAAAGAGAGGTGGCTGTGTGATATCTCATACTCCTGGAGTCGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCTGGGAAGAGGCCTCTAGTTCTTGCTCCTAAAACTACGCTCTATACTTGGTATAAAGAATTTATCAAGTGGGAGATTCCTATACCGGTGTACTTGATTCACGGTCGTAGGACTTATAGGGTGTTCAATCAGAATTTAGTTGCGGTTCTTCCTGGAGTTCCCAAGCCTACCGATGATGTCAAGCATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCCCATCCGAGTGTTCTAATCATGGGCTACAGTTCGTTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACAGAAAGTTTATGGCGAAAGTGTTGAGGGAAAGTCCTCAACTCTTGGTACTTGATGAAGGTCACAATCCTAGAAGCACTAAATCAAGGTTgcaaaaatgtttgatgaaagtGCAAACAGAATTGAGAATATTAATTTCCGGTactttgtttcaaaataacttCTGTGAATACTTCAACACTCTATGCTTGGCAAGACCAACATTTGCACACAAAGTGTTGAAAGCATTAGACCCTAAatacaagaagaaaaagaaaggagtAGCAGGGAAAGGAGCAGAAAAAGCGCAATATATGATCGAGTCACGGGCTAGAAAATTCTTCTTAGATGCAATCGCTAAGAAAATTGACTCAAATGTTGGTGATGAAAGGCTGCAAGGCTTAAACATGTTGAGAAATGTGACAAATGGATTTATCGATGTTTATGAAGGTGGAAGTGCTGATGGTTTACCTGGTTTATAA 1323 0.3794 MLWKEMEVGLASFYFDHSEVSNADASAEAEEKLKEVCEHDNILNEEIGIYCTRCGFVTTHIRDINPIFVDKAVWRQDEKACDEGENKEEPNMADEDDYFRLFPTDANPEEPISKENESVWSLIPEIKEKLHVHHKKAFEFLWQNIAGSTNPGLIEAESKKRGGCVISHTPGVGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFNQNLVAVLPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYSSFLTLMREDSKFAHRKFMAKVLRESPQLLVLDEGHNPRSTKSRLQKCLMKVQTELRILISGTLFQNNFCEYFNTLCLARPTFAHKVLKALDPKYKKKKKGVAGKGAEKAQYMIESRARKFFLDAIAKKIDSNVGDERLQGLNMLRNVTNGFIDVYEGGSADGLPGL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01243 440 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 440 IPR044567 GO:0080188
Tsu03g01243 440 Pfam SNF2-related domain 129 356 IPR000330 GO:0005524|GO:0140658
Tsu03g01243 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 357 IPR027417 -
Tsu03g01243 440 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 1 440 - -
Tsu03g01243 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 155 355 IPR014001 -
Tsu03g01243 440 SMART ultradead3 126 371 IPR014001 -
Tsu03g01243 440 Gene3D - 105 396 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01243 Tsu-Chr3 11752645 11754196 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Tsu03g01243 SNF2_N 5.4e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01243 K10875 - gmx:100811703 635.565