Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01242 ATGGCTAAGTGCAGTGGTTACCCTCTTGAGTTAGAGCTTTTGATAACTCTCGGATCAATACATCCTTGGTTGGTCAAAACCGCAGTATGTTCTCAGAAGTTTTTAACAAAAGAGCAATTGAGTGATCTAGATAAGTACAAGTTTGATTTGAAAATTGGTTCAAAAGTAAGATTTGTTTTGAGCCTTATCTACCGCGTTATCAAAAACGAAAAGGTTCTTATCTTTTGCCACAACATTGCTCCTGTGAAATTATTTCAAGAATATTTCGAGAAGTTCTTTGGATGGCAAAAAGGCCACGAAGTATTAGTACTAACCGGGGAACTCGAGCTCTTCGAACGTGGGAAAATAATGGATAAATTTGAGGAGCCTGGTAGTGTATCTAAGATACTACTTGCTTCAATTACAGCCTGTGCTGAAGGCATTAGTTTGACAGCAGCGTCTTGTGTGATTATGTTGGATTCAGAGTGGAACCCTTCAAAAACAAAGCAAGCCATTGCGCATGCGTTTCGTCCTGGTCAGCAGAAAATGGTTTATGTTTATCAGCTCTTGGTGACAGGTTCATTGGAAGAAGATAAATACCGAAGAACCACGTGGAAAGAGTGGGTTTCGAGCATGATTTTCAGCGAGGCGTTTGTCGAGGATCCTTCTTCTTGGCAAGGTGAGAAGATTGAAGATGATATTCTTAGAGAAATGGTCGAGGAGGATAAGTCTAAATCATTTCATATGattatgaagaacgaaaaagcTTCAACAAACAACAGACAAAagGACTGTCCGATTCGATGCTCAGAATTTCAGCAAGAGCATCAATAA 813 0.3875 MAKCSGYPLELELLITLGSIHPWLVKTAVCSQKFLTKEQLSDLDKYKFDLKIGSKVRFVLSLIYRVIKNEKVLIFCHNIAPVKLFQEYFEKFFGWQKGHEVLVLTGELELFERGKIMDKFEEPGSVSKILLASITACAEGISLTAASCVIMLDSEWNPSKTKQAIAHAFRPGQQKMVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSSWQGEKIEDDILREMVEEDKSKSFHMIMKNEKASTNNRQKDCPIRCSEFQQEHQ 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01242 270 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 1 251 - -
Tsu03g01242 270 CDD SF2_C_SNF 47 183 - -
Tsu03g01242 270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 235 IPR027417 -
Tsu03g01242 270 Gene3D - 15 264 IPR027417 -
Tsu03g01242 270 SMART helicmild6 83 172 IPR001650 -
Tsu03g01242 270 Pfam Helicase conserved C-terminal domain 55 171 IPR001650 -
Tsu03g01242 270 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 251 IPR044567 GO:0080188
Tsu03g01242 270 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 59 219 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01242 Tsu-Chr3 11751469 11752578 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01242 96 190 RAD5 or RAD16-like Gene Family AT5G43530 37.895 4.22e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01242 K10875 - gmx:100811703 448.358