Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01234 ATGAGTTCACTTTTGCAAAACCCATTTCACCATTATCATAATAGAAGTTGTAAAAGGAACCGTATTGTAAGCGAGTACTTCCTTCTTGAGAAGTCCACTGCAATAAAGGTTGCTGGCCTTTATGTGATGGCAGATGTGATTGCGAATATAATTGTGATTGTGACTGTTGCAACTGCGGTGGCGGTTATATATTTTGCAAGACCTATCCTTAGGCAATATCTTTTCCCCAAGCAAATGATAAAGGCAATGGGAAAACTACTCATAGGCAATATTCAATTTCAACCATTTTCTCGTCTTGATTCGCTAGGTTTTCAGTATCAGACTGCAATTGCATCTAAAGACTTCATTTATTTTGCATCAACACTAAAGGCTTACGATGAACTCTTTGAGGCACTCAATGACGACTCTATCCTTATGATAGGATTGTATGGAGAAGTTGGATGTGGAAAAACAACTCTTGCAACTGAAGTGGGCAAGCAGGCTGAGGATCGGAAAATGTTCGATAAGATCATATCAATCACTGTGTCTCAAACTCCAGATATTAGAGGCATTCAAGATAAAATTGCAGATATGTTAAACTTGACATTGACGGAAGTAACTCCAGATATAAGAGCACAACGTTTATGGTTgcatttaaaagaaaagaagcgAATCCTTATCATAGTAGACGATCTATGGACAGCCTTTGATTTGAAGAAGATAGGGATTCACTTAGACAATATTAACAAGCACACTTGGAAGATCCTCATAACCACTCGTCACAAGCGTGTTTGTACACCAATGAAATGTCAAAAGAAGATTCATTTGGAGCTCTTgtctgaagatgaatcttggAATTTTTTCCAAAAGTTTGCAGGAATTGATGATGAATACTCCACGGTATTGAATGACGTGCCACGAAAAATATGCAATGAATGTATGGGACTTCCCATAGCAATCAAAATTGTGGGGTCATTATTCAATGAAAGGGAGGAAATTGAGTGGCAGCAGGCGTATGAGAAGTTAAGGGCTTCAAAGGCATCTGACGATGAAGAGAATGCTACTTCTTGCCTTAAATTAAGCTATGATCATTTGCCAAcacaaaaagcaaaacaaatctTTCTATTGTGTGCTCTTTTTCCAGAAGAATATCACATCCAAACAGAAGATTTGGTGAGGTATGTAGTTGGACTAAGTAGCAGAGAAATATCATCCTTACAGAAAATGAAGAGCTCGATCAGGGCAGTCATTAATGAAATTCTAGATTCTGGTTTGCTGATGCGTGGTTCTGTGAAGATGCATAACATGGCTCGTGATGCAGCCTTATGGATCGCAAATAGATCAGATAACAACAAAATCTTTGTAAATGTTGACAAACCACTTAGCACTGTGGCAGAAGATAACAGTATAAGAGATTGTTTTGCACTATCTTCATGGTGGTTTAATGAAGATCCCTCTTTTTGTCAATTGCATGCTCCAAATCTTAAAATGCTATTGGTAAATATAAGTGCTCATAGTTCATTGAATTCCTTGAATTTATCACCTTTAACATTTGAAGGAATACAAGGGCTTCAGGTATTCTCTCTAACCATCAATTACAAAATAGTACCAATATCATTTCCTCCATCAATCCAACTGTTGACAAATGTTCGAACTCTGCGCTTTAATGGATTGAATCTTGGTGACATTTCTTTCATAGCAAGCTTAACAAGTCTAGAGGTTCTTGACTTGCGATGTTGTTACTTCAACGAACTTCCCATTGGCATAGGAAAACTCAAAAGCCTGAAGCTGCTAGATTTGTCagaatgtcaattttctgaaaAAACCTACAACAGAGCTATAGGGAAATGTTCACAGCTAGAGGAGTTATATGCTTCAAACTGCTACCCAAATGAGTATGCCAATGAGATCATTATGGATATTTGTATTCTCCTAAATCTACAAAGGTTTGTACTTGGTGATCAAATCATTCAAGAAAGCACTAGACTTCTACGAGCACATGATTTTAATATCTCAAAGTTGAGGacattcaacaaaaatattctGCAAGTAGCAGAAACTATTTCTTTGGTTGGTCTCCATGGAGGATGTAAAAGTATCGTCCCAGATATGGTTGGAGTTGTGGGAAGCATGAATAATTTGTCTACTCTCTATCTTACAGATTGTGAAGAGATAGAATGCATCTTCGATGCAACCTATGATTTGAAGGAAGATGATTTGATTCCTAGTTTGGCCGCGTTACGCCTTAAGAATATGTTTAACTTGAAAGAACTGTGTCATGGTCCACCTCTTCAAGTATTACACTACTTTGAGAAACTGGAACTACTTGACATAGACCATTGCCAGAAGTTACACGTCATATTTCCACGGGAATGTAAGCTGCGAAATCTTAAGCTCCTCAGATTATCAAATTGCAAGACCAATGAAGTACTCTTCTCGGCATCTGTTGCTCAAAGTTTGCAGCAACTAGAACAACTAAAAATAAGTGATTGCAATGAATTGAAGCATATAATTGCTGCAAGTGGAAGCGAACTTATGAATGAATTGGAAATTGTTCTTCCGAACTTGACAAACATAACACTGCACAATCTTCCAAATTTTGTAGATATCTGCAATGGTTCTAAGTTACATGCCGTTAAACTTCAAATACTCAACATATATAACTGCCCCAAAACTGCTTCAAGCTTAAGATCAACAATTCAGttgttAATTAATAAGCATCAAACTGAAGAAGCAGCATCAGAAGATAAGCATGAAACTGAAGAAGCGCATTATGTGGAAGAAATCAAACTTCggggaaaaaaagaaataaaaaaaaagaaaattgaaaaagcaATGTATACTCCTTCGTACCAACCTTACTCACCTTTGCAAGATGAAGAACAACCCGAATGTGTGCTCATGTGA 2886 0.3572 MSSLLQNPFHHYHNRSCKRNRIVSEYFLLEKSTAIKVAGLYVMADVIANIIVIVTVATAVAVIYFARPILRQYLFPKQMIKAMGKLLIGNIQFQPFSRLDSLGFQYQTAIASKDFIYFASTLKAYDELFEALNDDSILMIGLYGEVGCGKTTLATEVGKQAEDRKMFDKIISITVSQTPDIRGIQDKIADMLNLTLTEVTPDIRAQRLWLHLKEKKRILIIVDDLWTAFDLKKIGIHLDNINKHTWKILITTRHKRVCTPMKCQKKIHLELLSEDESWNFFQKFAGIDDEYSTVLNDVPRKICNECMGLPIAIKIVGSLFNEREEIEWQQAYEKLRASKASDDEENATSCLKLSYDHLPTQKAKQIFLLCALFPEEYHIQTEDLVRYVVGLSSREISSLQKMKSSIRAVINEILDSGLLMRGSVKMHNMARDAALWIANRSDNNKIFVNVDKPLSTVAEDNSIRDCFALSSWWFNEDPSFCQLHAPNLKMLLVNISAHSSLNSLNLSPLTFEGIQGLQVFSLTINYKIVPISFPPSIQLLTNVRTLRFNGLNLGDISFIASLTSLEVLDLRCCYFNELPIGIGKLKSLKLLDLSECQFSEKTYNRAIGKCSQLEELYASNCYPNEYANEIIMDICILLNLQRFVLGDQIIQESTRLLRAHDFNISKLRTFNKNILQVAETISLVGLHGGCKSIVPDMVGVVGSMNNLSTLYLTDCEEIECIFDATYDLKEDDLIPSLAALRLKNMFNLKELCHGPPLQVLHYFEKLELLDIDHCQKLHVIFPRECKLRNLKLLRLSNCKTNEVLFSASVAQSLQQLEQLKISDCNELKHIIAASGSELMNELEIVLPNLTNITLHNLPNFVDICNGSKLHAVKLQILNIYNCPKTASSLRSTIQLLINKHQTEEAASEDKHETEEAHYVEEIKLRGKKEIKKKKIEKAMYTPSYQPYSPLQDEEQPECVLM 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01234 961 SUPERFAMILY L domain-like 425 886 - -
Tsu03g01234 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 370 IPR027417 -
Tsu03g01234 961 Gene3D - 271 359 IPR042197 -
Tsu03g01234 961 PRINTS Disease resistance protein signature 212 226 - -
Tsu03g01234 961 PRINTS Disease resistance protein signature 583 599 - -
Tsu03g01234 961 PRINTS Disease resistance protein signature 139 154 - -
Tsu03g01234 961 PRINTS Disease resistance protein signature 306 320 - -
Tsu03g01234 961 Gene3D Ribonuclease Inhibitor 486 664 IPR032675 -
Tsu03g01234 961 Pfam NB-ARC domain 126 356 IPR002182 GO:0043531
Tsu03g01234 961 SMART AAA_5 136 284 IPR003593 -
Tsu03g01234 961 PANTHER - 118 884 - -
Tsu03g01234 961 Gene3D Ribonuclease Inhibitor 665 783 IPR032675 -
Tsu03g01234 961 Gene3D Ribonuclease Inhibitor 784 917 IPR032675 -
Tsu03g01234 961 Gene3D - 104 270 IPR027417 -
Tsu03g01234 961 CDD AAA 123 253 - -
Tsu03g01234 961 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 118 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01234 Tsu-Chr3 11593953 11598458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01234 137 440 WRKY Transcription Factor Family AT5G45050 24.675 2.52e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01234 - - mtr:MTR_3g053200 946.036