Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01231 AGATTTTGACGAGATACCACTTCCAAAAAATGTTTGACAAGGTTATATCAATCACTGTGTCTCAAACTCGAGATATTAGAGGCTTTCAAGGAAAAATTGCAGATATGTTAAACTTGAGATTGGGGGAAGAAACTCCAGATGGAAGAGCACAACGTTTATGGATGAaaaaattggagaggatccaaatccttctTATAATAGTAGACGATCTATGGAGTGAGTTTCATATGGGGGATATTGGAATTCCCTTAGACCATGTTAATGGATGCAAATGGAAAATCCTTGTAGTCACTCGTAACAAACATATCTGCACTTTAATGGACTGTCAAGAGATGATTCATTTGGTGCACTTgtctgaagatgaatcttggACTTTGTTCCGAAAGCTTGCAAGAATTGATGACAAATTCTGCGAGTTATTAGATGGTGTGCCACGGAAAATTTGCAACGAATGCAAGGGAGTTCTCATAGCAATTAAAACTATGGCATCTTCCTTAAGAGGAAAGAATAATACTGAGTGGCAGTCAACATTAGCCAAGTTGATCGATTCAAAAGCATTTGATGATCAGGAAGGAGGAGAGAGGAATGCTTTAAATTGTATTAAATTAAGCTATGATTGTTTACAAAATAGAGAAGCAGAGCTGCTCTTTCTGATGTGTTGTATGTTTCCACAAGACTATCACATTCCAATAGAAGATTTGACGAGATATGCAACTGGACTATCTAGAACATACTCATTTCAATTAACGAGGAGCTTGGTCGAAGCATGCATAAACAGACTTTACGAGTCAAGTATGCTGATGCGTGGTTCCGTGAAGATGCATAACATGGTTCGTGATGCAGCCTTATGGATTGCAAATAGATCAGATAATTGCAAAATCTTGGTAAATGTTGACAAACCACTTAGTACTGTGGCAGAAGATAACAATATAAGAGATTGTTTTGCACTATCTTCATGGTGGTTTAATGAAAATCCCTCTTTTTGTCAATTGCATGCTCCAAATCTTAAAATTCTATTGGTAAATATAAGTGCTCATAGTTCATTGAATTCCCTGGATTTATCGAATTTAACATTCGAAGGAATACAAGAGCTTGAGGTTTTTTCTCTAACCATCAATTACAAAATTGTACCAATATCATTTCTTTCATCAACCCACTTGTTGACATATGTTCGAACTTTGCGATTAAATGGACTAAAGTTTGTTGACATTTCTTTCATAGCAAGCTTAACAAGACTTGAGGTTCTTGACTTGCGACGTTGTGACTTCAACGAACTTCCTATTGAAATAGGAAAACTCGAAAGCCTGAAGCTGCTAGATTTGTCAGAATGTCATATTTTTGAAAACAACTATAATGGAGCAATAGGGAAATGTTCAAAACTAGAGGAGTTATATGCTTCAGCTTGCTACCCAGAAGAGTATGTTTATGAGATCATTATGGATATTGGAATTCTCCCAAATCTACAAAGGTTTGTACTTAATGATCCAATCATTCGGGAAAGAACAAGAGTTCTACGGGTAAATGATTTTGATATCTCAAAGTTGAGGGCATCCAAAAAGAATATTCTACAAATATCTGAAGCTGTCGTTTTGAGAGGCCTCCAAGGAGGatgtaaaaatatcatcccAGATATGGTTGGAGTTGTGGGAGGCATGAATC 1659 0.3514 ILTRYHFQKMFDKVISITVSQTRDIRGFQGKIADMLNLRLGEETPDGRAQRLWMKKLERIQILLIIVDDLWSEFHMGDIGIPLDHVNGCKWKILVVTRNKHICTLMDCQEMIHLVHLSEDESWTLFRKLARIDDKFCELLDGVPRKICNECKGVLIAIKTMASSLRGKNNTEWQSTLAKLIDSKAFDDQEGGERNALNCIKLSYDCLQNREAELLFLMCCMFPQDYHIPIEDLTRYATGLSRTYSFQLTRSLVEACINRLYESSMLMRGSVKMHNMVRDAALWIANRSDNCKILVNVDKPLSTVAEDNNIRDCFALSSWWFNENPSFCQLHAPNLKILLVNISAHSSLNSLDLSNLTFEGIQELEVFSLTINYKIVPISFLSSTHLLTYVRTLRLNGLKFVDISFIASLTRLEVLDLRRCDFNELPIEIGKLESLKLLDLSECHIFENNYNGAIGKCSKLEELYASACYPEEYVYEIIMDIGILPNLQRFVLNDPIIRERTRVLRVNDFDISKLRASKKNILQISEAVVLRGLQGGCKNIIPDMVGVVGGMN 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01231 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 211 IPR027417 -
Tsu03g01231 552 SUPERFAMILY L domain-like 272 494 - -
Tsu03g01231 552 PANTHER NB-ARC DOMAIN DISEASE RESISTANCE PROTEIN 11 512 - -
Tsu03g01231 552 Gene3D - 2 114 IPR027417 -
Tsu03g01231 552 Gene3D - 203 282 IPR036388 -
Tsu03g01231 552 PRINTS Disease resistance protein signature 151 165 - -
Tsu03g01231 552 PRINTS Disease resistance protein signature 57 71 - -
Tsu03g01231 552 PRINTS Disease resistance protein signature 430 446 - -
Tsu03g01231 552 Pfam NB-ARC domain 7 186 IPR002182 GO:0043531
Tsu03g01231 552 Gene3D Ribonuclease Inhibitor 299 508 IPR032675 -
Tsu03g01231 552 Gene3D - 116 202 IPR042197 -
Tsu03g01231 552 PANTHER - 11 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01231 Tsu-Chr3 11582976 11584841 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01231 63 287 WRKY Transcription Factor Family AT5G45050 25.106 3.24e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01231 - - mtr:MTR_3g053200 757.673