Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01212 atggaagaagaagatattGATATTGGAAACTCTAATGTTGAAGTTCCACATTCTTCTTCTCAAGTCATGTCATTTAATGGAAAAAGATTAATCATGGATGAAGTTGATTTCTTTGCTCAAAAGAAAATGAGTCCAGTTCATCATGACCAACGGATAGAGCATCATCACGTAGATACTAGTATTAGTACTTTAGATCTTCTCACAAAGATTTCTCTTAGCAACAAATCAACAATGGATGATGGAGAATATTCCGAAGCAACGATTAggaacaaaaatgagTGTGCTGCTTTGGTAGCTGAATTGCACCAAATGAATGTTGAAAACCAACGTTTGAAAGAGCTAGTTGATAAGCTGAGAATTGATTGCAATGCCCTAGAAGAGCATGTTGTGCAGTTGAAGCAAAAACAATATAAACAAGAGATTAATGATGAAGCAACTGAAgataagaaaaggaaaaacatggTTGACTTGATGGAGAATGATAAAAAGACTCAAAAGATTTGCATCAATGGAGTTATACAAGAGAAGATGGAGAGGGATGATAATGAGATTCAACAAGCTATGAAAGGATTTCCAGGCTGGCTCTCAAACAATGTTCCAAGGTTAAATTCTTTTAAGGGTGTTGATGATCAAGGAACAGAATCAATGATTAAAAAAGCTCGTGTATCAGTTAGAGCAAGATCAGAAGCTACTATGATTTCAGATGGATGTCAATGGAGAAAATATGGACAGAAGATGGCAAAGGGAAATCCATGTCCAAGAGCTTATTATCGTTGCACAATGGGAACTGCTTGTCCAGTTCGGAAACAAGTACAAAGGTGTGCTGAAGATAAAAGTATATTAGTACAAACATATGAAGGACAACATAACCATCCTCTACCACCAACAGCAAAAGCAATGGCATCAACAACATCCGCAGCAGCATCACTTCTTCTTTCAGGACCATTAACAAGTGCAGATGGTTTAATAAATCCAACAATCTTAGAAAGTGCATCAATTCCTGGTTCACATAACATGGCAACACTTTCAGCTTCAGCACCATTTCCAACTATCACATTAGATCTCACTGAAGATGCTACCAAAAATTCTTCACAACAAAGTCAATTTAACCTCATTCAACCAATTTTGGCTCAGAAGTTTCTGTCATCATTAAATGTTTCTGGAATGGAAAATGCTTCATTTGCTGATACTGTTAGTGCTGCTACAGCTGCTATGACTTCTGATCCGAAATTCACAACTGCTCTTGTTGCTGCCATAACTTCCATCATTGGAAGTAATTCAAATCCAAATAATAATAGTACTACAAATGGTTTCGCCACCACTATCGGTGCTGCAACCGTGCAACGTTCAGTTGTTGCCACAACTACAAAGACAAATCCTTGTTGGATTGGCGGCGGAGGTTTAGGGCAAAACCCTAACAATGATAGTTTCACAAATTCACTACAATGGAGGAACATGAATCAGGTTAATTGTAAAATTCGCTCTCAATTTTCAATGGCTTTTCCTCCTTACCGTCGATCTCACTTCCGTAGTGAAACTTACAACACTCTTGTTCGTATTCTCTCTCATATCTCTCCTTCCACCGTTCCTACTCAATCCCTCAATGTTCCTGATAATGGCAATGTTGGAATGGGGCAAGAGAACCAAGAAAAGGAACCTGAGTGCTCTGAGTTAAAAGTTGGCTCTGATGTTAAGGATTGCAAGGGTCCAGTACCCTTGGAGGAAATACATGATGTCCCTGATACCATTGGAAGTGTTGGAGACAAGGACGAGGATTTGAGTGCCACTGCTATGGTCCTAGATGATATAGAATTTCTGATGGGAAAAGAGGAACCATCTACAcaaacaaatgattttcaatgCGAGCAGAAACTAATGGATGAGTTGGAGCTGGTTGTGAAAGGGATTGAAGATCCTGTTTGTGATAATGGTTTAATCCCTTTGAACTGTGAGAACCAGAATATCAGTAGTGAAGTTGATTTGATGGATTACCAAGTTGAAGAACACGTTGAATTTCTGCATTCTGGTACAAACACGTCTGAAAGTGTAAGTGCGGTGTTGACGCAAGTACAAGGGGAGCTTAATCAACTTGCCTCGGAAGGCTTTCTTGTCTTAGAGTCAACGAAGGAACACGCTTCCAATTCCATAATTAGTACATCAAGTATAGAGAATGAAAGTCAAAAGAAGGAAACAGAATTGGTGAATCCGGTTTCTCCTGTAGTGGTCTCTCTTCCTACTATACAAGAGGGTGAATTTGAGAAGGAAGAACAGGATGGTCATAAAGCTGTTGAAGAAACTCATAGTTCTTTAGATCTTGATACGAATATTGAAGCATTGAATATGGCAGAAGATGGTGGATTACTGGATTCAACAATTATGAACGATAAATCTGAAacagaaaatgaagagaaacCAGATAAGTTAATTTGTCCCAGAAATACAACAAATTCTTCTGATATTCTTATTGAAGAAGGAGATCTAGAAGAGGGAGAAATATCTGGAGATTTTGCATTGGATGGAAACACTTTTGATGTGTCTTCTGTGGATGATATCGTTTCAGAACAGATGAGAGTGGATGAAATTCAGAAACCCGAGAATTCATTTGGAAACACAATATCTCCTTTCAATCTCTCCTTTCAAGGTTTTCCGTCTAATCATTTCATGGTAAATGCAATTCAAGATTCCAATAGCAATGGACAAGTACAACCTAGGACTATCAATGTCATACCAACAAATTTAACCCAAAATCAAGTCTTGCACAAAGGATTCGTGGAAGGAACTGCTATCAAAGCTCACGGGAATTCGTCTGCAGTGCAGCAGATGGCTGATGCCAGCAGAAAGGAACAAAGTAGTCCTGGccctaagaagaagaagaaaaacaaaaagGAGGTGATCAATGCCAGTAGAAAACGAAAATATGTTCCTGATTCTGAGaaggaagatgaaaataagCAGATGGTTGGCGCCAGGGGAAGTAAACGTGGTCCTGGTTCTCAGGAGAAGAAAACTAGAAATAGGGAGCAGTATCGAAATAacatagcaaaaaagaacagagAACTAGGTGTTAAAAGGATGAAGTTGGTTCCAGTACAAAAACCGAAAATTATTCCATTTTGTCGCCATTATATTATAGGAAGGTGCCATGAGGGTGACAAGTGCTCTTTTTCACATGATACTATTCCTTCAACAAAGTCCACGCCATGTATTCACTTTGCTCGCCACTCTTGTATGAAAGGGGATGATTGCCCATTTGATCATCAGCTCTCCAAGTATCCTTGTTCCAATTTTGTGTCTAAAGGCTCTTGTAGTAGAGGTCATGCTTGTATGTTTTCACACAAGGTGCCAACCAACCAAGATATACCTACGCCTACAAATGCTTGCAAACCGGAGTTGAAGTCTCCTCTTTCGTTAGGAAATACAAATTTCAGTACCCCACTGAATAATCATGGCAATAGTTCTGTCCAGCAAAATCGCTTCACCAATTCTAAAGGAATTTATTCTCTCACCAATGTAGAACATAAGGTGGCAGACGCTTCGCGGACAAAACCAACCTCAGCACCCAAAGGAATTAGATTCATAAATGTTGCCAACTTATCACCTAGTACGCCAAAACAAGACACAGTAACACCAAACAAGGGAAGTGTTGGCAGCAATGGAATGTGTGCAGATAAAGGTCAAAATACTGTGGAAGTTCCTAAGAAATTTTCAGCTGTCACACCTAAGGGAATTAACTTTCTTTCTTTCGGCAACAGTTCTGTTTGCAGTTTTAAAAGTTCTATTCAATCCACTGCAGAAGGAATGACATTGAAGTTGCCTCAGTCAGTCAATTTTGGTTTTTCTGAACATTCAATTTCATCTCTGAATAAGGATGATTATGGAAAAGCTAGTGACAGAACTGCACAACATTTACCACAAACTGCGCAATTCTCACATGAGATTTCAGAGAAAAATCAATCCATGGCAGAACGAATGAAATCAAAGATTTTAGCGAAAGATTCAACCGATGATTCTGTGAGGGATCACGGCCATTTTAAATCGGTTCTAGAGGGAAAAAAGGCATCCGATAATTCTGAGACTTCAACTGTGACCTCAGCTACGCTTCTTGCTCGTCCGTTTGCTTCACAGCAGGCTTCAGATGGTGTAGTATCTGGATATCATAAACAAGCATCAAACTTAGGCCAAAGGGCACTCTTGTCGACTTTAGCTTTTGCAGCGGAGCATGAATCAGGTATTAAGATGAAGTGCCCTACTGGTGTTTCACCTGTATAA 4269 0.3802 MEEEDIDIGNSNVEVPHSSSQVMSFNGKRLIMDEVDFFAQKKMSPVHHDQRIEHHHVDTSISTLDLLTKISLSNKSTMDDGEYSEATIRNKNECAALVAELHQMNVENQRLKELVDKLRIDCNALEEHVVQLKQKQYKQEINDEATEDKKRKNMVDLMENDKKTQKICINGVIQEKMERDDNEIQQAMKGFPGWLSNNVPRLNSFKGVDDQGTESMIKKARVSVRARSEATMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTACPVRKQVQRCAEDKSILVQTYEGQHNHPLPPTAKAMASTTSAAASLLLSGPLTSADGLINPTILESASIPGSHNMATLSASAPFPTITLDLTEDATKNSSQQSQFNLIQPILAQKFLSSLNVSGMENASFADTVSAATAAMTSDPKFTTALVAAITSIIGSNSNPNNNSTTNGFATTIGAATVQRSVVATTTKTNPCWIGGGGLGQNPNNDSFTNSLQWRNMNQVNCKIRSQFSMAFPPYRRSHFRSETYNTLVRILSHISPSTVPTQSLNVPDNGNVGMGQENQEKEPECSELKVGSDVKDCKGPVPLEEIHDVPDTIGSVGDKDEDLSATAMVLDDIEFLMGKEEPSTQTNDFQCEQKLMDELELVVKGIEDPVCDNGLIPLNCENQNISSEVDLMDYQVEEHVEFLHSGTNTSESVSAVLTQVQGELNQLASEGFLVLESTKEHASNSIISTSSIENESQKKETELVNPVSPVVVSLPTIQEGEFEKEEQDGHKAVEETHSSLDLDTNIEALNMAEDGGLLDSTIMNDKSETENEEKPDKLICPRNTTNSSDILIEEGDLEEGEISGDFALDGNTFDVSSVDDIVSEQMRVDEIQKPENSFGNTISPFNLSFQGFPSNHFMVNAIQDSNSNGQVQPRTINVIPTNLTQNQVLHKGFVEGTAIKAHGNSSAVQQMADASRKEQSSPGPKKKKKNKKEVINASRKRKYVPDSEKEDENKQMVGARGSKRGPGSQEKKTRNREQYRNNIAKKNRELGVKRMKLVPVQKPKIIPFCRHYIIGRCHEGDKCSFSHDTIPSTKSTPCIHFARHSCMKGDDCPFDHQLSKYPCSNFVSKGSCSRGHACMFSHKVPTNQDIPTPTNACKPELKSPLSLGNTNFSTPLNNHGNSSVQQNRFTNSKGIYSLTNVEHKVADASRTKPTSAPKGIRFINVANLSPSTPKQDTVTPNKGSVGSNGMCADKGQNTVEVPKKFSAVTPKGINFLSFGNSSVCSFKSSIQSTAEGMTLKLPQSVNFGFSEHSISSLNKDDYGKASDRTAQHLPQTAQFSHEISEKNQSMAERMKSKILAKDSTDDSVRDHGHFKSVLEGKKASDNSETSTVTSATLLARPFASQQASDGVVSGYHKQASNLGQRALLSTLAFAAEHESGIKMKCPTGVSPV 1422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01212 1422 Pfam WRKY DNA -binding domain 235 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01212 1422 ProSiteProfiles Zinc finger C3H1-type profile. 1062 1089 IPR000571 GO:0046872
Tsu03g01212 1422 Coils Coil 999 1019 - -
Tsu03g01212 1422 ProSiteProfiles Zinc finger C3H1-type profile. 1033 1060 IPR000571 GO:0046872
Tsu03g01212 1422 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 16 145 IPR044810 GO:0003700
Tsu03g01212 1422 Coils Coil 94 135 - -
Tsu03g01212 1422 MobiDBLite consensus disorder prediction 934 1014 - -
Tsu03g01212 1422 SUPERFAMILY WRKY DNA-binding domain 226 294 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01212 1422 Gene3D - 1030 1090 - -
Tsu03g01212 1422 MobiDBLite consensus disorder prediction 995 1014 - -
Tsu03g01212 1422 MobiDBLite consensus disorder prediction 967 988 - -
Tsu03g01212 1422 Gene3D WRKY domain 218 295 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu03g01212 1422 MobiDBLite consensus disorder prediction 952 966 - -
Tsu03g01212 1422 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 16 145 - -
Tsu03g01212 1422 ProSiteProfiles WRKY domain profile. 228 294 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01212 1422 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 147 432 - -
Tsu03g01212 1422 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 147 432 IPR044810 GO:0003700
Tsu03g01212 1422 SMART c3hfinal6 1034 1059 IPR000571 GO:0046872
Tsu03g01212 1422 SMART c3hfinal6 1090 1114 IPR000571 GO:0046872
Tsu03g01212 1422 SMART c3hfinal6 1062 1088 IPR000571 GO:0046872
Tsu03g01212 1422 SMART WRKY_cls 233 293 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu03g01212 1422 ProSiteProfiles Zinc finger C3H1-type profile. 1092 1115 IPR000571 GO:0046872
Tsu03g01212 1422 SUPERFAMILY CCCH zinc finger 1034 1058 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01212 Tsu-Chr3 11365797 11380759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01212 29 426 WRKY Transcription Factor Family AT1G62300 42.950 7.69e-81 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu03g01212 WRKY 2.8e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01212 - - cam:101495956 1146.72