Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01207 ATGGGTCGTGGAGGTGGAACAACCGCCGCCGCCGCGGCGGCAGCGGCGGCTGAACCGGGTTTTTTCAAAGAGCCAAGATACAGAGGCGTGAGAAAAAGACCGTGGGGTCGATTCGCCGCGGAGATCAGAGATCCTTTGAAGAAAGCAAGAGTTTGGCTTGGAACATTTGATACGGCTGAAGAGGCGGCGCGTGCATATGACACCGCCGCTAGAAATCTCCGGGGACCAAAAGCCAAGACAAATTTTCCTCTTCCACAGCCTTTTTACCATAATATTGATGCCGGAGATCCGTTTTCCGATCAACGTTTTTACGCCGGTGCCGGAGTTGTCGCCGGCGATGGGTTTCAGGATCATCGGAGACCTACATCAAGTGGGATGAGCAGCACCGTTGAATCCTTCAGCGGTCCACGTCCGATCGGATTACCAGCACCGCCGTCGATCGTCGCCGGAAGAAGGTACCCACGTACACCGCCGGTTGCTCCAGAGGATTGCCGTAGTGACTGTGATTCTTCGTCGTCGGTTGTTGACGACGGTGACGGCGACAACGTGGCTTCATCAACGATGCTTTCTTTTAAACGTCAACCACTGCCGTTTGATCTGAACGCGCCGCCGTTGGAAGATGCTGACGTGGCAAACTATGGTGGTGAAGATCTACACTGCACCCTTCTCTGCCTCTGA 678 0.5487 MGRGGGTTAAAAAAAAAEPGFFKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDTAEEAARAYDTAARNLRGPKAKTNFPLPQPFYHNIDAGDPFSDQRFYAGAGVVAGDGFQDHRRPTSSGMSSTVESFSGPRPIGLPAPPSIVAGRRYPRTPPVAPEDCRSDCDSSSSVVDDGDGDNVASSTMLSFKRQPLPFDLNAPPLEDADVANYGGEDLHCTLLCL 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01207 225 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677
Tsu03g01207 225 PANTHER ETHYLENE RESPONSE FACTOR 1 199 - -
Tsu03g01207 225 Gene3D AP2/ERF domain 26 84 IPR036955 GO:0003700|GO:0006355
Tsu03g01207 225 Pfam AP2 domain 25 75 IPR001471 GO:0003700|GO:0006355
Tsu03g01207 225 MobiDBLite consensus disorder prediction 166 181 - -
Tsu03g01207 225 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 199 - -
Tsu03g01207 225 MobiDBLite consensus disorder prediction 120 134 - -
Tsu03g01207 225 MobiDBLite consensus disorder prediction 114 181 - -
Tsu03g01207 225 SMART rav1_2 26 89 IPR001471 GO:0003700|GO:0006355
Tsu03g01207 225 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700|GO:0006355
Tsu03g01207 225 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700|GO:0006355
Tsu03g01207 225 CDD AP2 25 83 IPR001471 GO:0003700|GO:0006355
Tsu03g01207 225 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01207 Tsu-Chr3 11292192 11294513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01207 1 225 AP2-EREBP Transcription Factor Family AT3G20310 52.419 7.01e-59 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g01207 AP2 1.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01207 K09286 - gmx:100782025 286.574