Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01206 ATGGGTAGCGAAGAAGAGAGGGTTCTTGAGAACCAACTCGAACTTCAATTGCTTGAACAAAAAGACTCTCTTTCTGCCATTGATCATGCTCTCCTCATTGATCCCACCAATTCCGAACTCCTTGAGGTTCACGAGGAGCTTGTTCAGGCTATTAAGGATGCCGAGGAAGGGCTTCTTCACCTAAAGCGTTCAAGATTATTATCTGAAGCAGACACGTTGCTGCCTAGTACTAATATTTTTGCTGAAGAAGAGAAAGTGGAGCCAATTGTTCCTGTAGATGTTGAACCAGAGCCGCTAGAGGAAAAAGGCTATTCTGTTGGATCTACATGTAGATTCCGTTACAAAGATGGGCGTTGGTACAATGGTCAAGTGCTGCAATTGGATAATTCAGTGGCAAAGATTTCATTTCTAACTCCTACATCTGAGAATATGATGATTTGCAAGTTCTTTTTACAACAGCGATGTCGATTTGGTAGTAACTGTCGCCTATCCCATGGAGTTGATGTTCCACTATCCTCCCTTAAGGAACATGTCCCAACAATCTGGAAACCGTCCCTTGCAGGGTCAAGCATATGGGCAGTCTCAAATGCAAATCCAGGAATTTGGAGAGAAGCTGAGCTTGAGTCATGGGACGAAAACGCTGGAGTTGGTCAAGTTGTTTTCCGAGACGATGGAAGTTCTGTGAAGCTTGGTGCACAAGATATGGTATTATCTGAGTATGCAGATGTGAGTGACATAGATAGTGATTCCAGCTTAGAACAATCCGATTACAGCGGCTCAGAGGAAGAGGAACCACAGGGTTTAGGATTTATGGATAGTACCAACTTACAGAAAGGCGTTCAAACCGAAACTGCAATATTTGCGAAGTGGGAGAACCATACCAGGGGCATGGCTTCCAAAATGATGGCTAATATGGGTTACCGAGAAGGAACGGGTTTAGGTTTAACTGGACAGGGCATGCTTAATCCCATACCAGTGAAGGTCCTACCACCAGGAAAGTCCTTAGAGCACGCGCTTAAGTCTCATAGAGTGGAAGAGAAAAccgagaagaaaagaaagaaacgtACCAGAGGTGGTAGGAGAAAACGCGAGAAGAAATTTGCTGAAGCAATTCGTGCtgcaaaagaagaagaagaatcggCACCAGATGTCTTTTCACTAATAAACACTCAACTAGCAATGCACGGTGAAGCTTCCAATGATGGATCAACGAAGAAGCAGCAAAGTAGAAGTTCAGCGGAAGGTAAAAAGGTGGATAGGAAGGTGTTGGTTGCTTATGAGAATGATGTGAAGGATCTGAAAATTCAGGTTCTAAAGTTTGAACAAATGGCGGAAGCAAACAAGAGAGAAAAACCTGTTTACGATGCTGCTATGAAAAAATTAGTCCAAACCCGCAAGGCTTTGGCTGAGGCTGAAGCAGTTCACGCTTCAGCCTCACATGATGTTGTTagcaaagaaaaagagaagagatGGCTTAAGTTTTAG 1485 0.4189 MGSEEERVLENQLELQLLEQKDSLSAIDHALLIDPTNSELLEVHEELVQAIKDAEEGLLHLKRSRLLSEADTLLPSTNIFAEEEKVEPIVPVDVEPEPLEEKGYSVGSTCRFRYKDGRWYNGQVLQLDNSVAKISFLTPTSENMMICKFFLQQRCRFGSNCRLSHGVDVPLSSLKEHVPTIWKPSLAGSSIWAVSNANPGIWREAELESWDENAGVGQVVFRDDGSSVKLGAQDMVLSEYADVSDIDSDSSLEQSDYSGSEEEEPQGLGFMDSTNLQKGVQTETAIFAKWENHTRGMASKMMANMGYREGTGLGLTGQGMLNPIPVKVLPPGKSLEHALKSHRVEEKTEKKRKKRTRGGRRKREKKFAEAIRAAKEEEESAPDVFSLINTQLAMHGEASNDGSTKKQQSRSSAEGKKVDRKVLVAYENDVKDLKIQVLKFEQMAEANKREKPVYDAAMKKLVQTRKALAEAEAVHASASHDVVSKEKEKRWLKF 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01206 494 Coils Coil 423 443 - -
Tsu03g01206 494 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Tsu03g01206 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 494 - -
Tsu03g01206 494 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Tsu03g01206 494 ProSiteProfiles G-patch domain profile. 294 340 IPR000467 GO:0003676
Tsu03g01206 494 Gene3D - 105 178 - -
Tsu03g01206 494 MobiDBLite consensus disorder prediction 347 362 - -
Tsu03g01206 494 Coils Coil 454 474 - -
Tsu03g01206 494 MobiDBLite consensus disorder prediction 245 275 - -
Tsu03g01206 494 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Tsu03g01206 494 MobiDBLite consensus disorder prediction 338 368 - -
Tsu03g01206 494 MobiDBLite consensus disorder prediction 396 417 - -
Tsu03g01206 494 SMART G-patch_5 292 338 IPR000467 GO:0003676
Tsu03g01206 494 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Tsu03g01206 494 Pfam G-patch domain 294 335 IPR000467 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g01206 G-patch 1.2e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01206 - - gmx:100794921 653.669