Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01182 ATGAGCAACTTGATATCTTTTTCTCTACATGAGAATAATATAAATGGACCAATACCTAGTGCATTCAAAGATTTACAAAAACTTGAGGCGTTTGATCTTAGCAACAATGGACTAAAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAGAGTTTGGTTCAATtggaaatagaaaataacaatCTTTCCGGAGTTTTACCAACATGTTTGGGAAATATGACTTctcttatatatttatatataggaaATAACAGTTTGAACTCTATACCTTCCTCTTTTTGGAGTCTCCCAGATATCTTAGAGGTAGATTTTTCCTCTAATGCTTTCATTGGTAATCTTCCACTTGAGATTGGAAATTTCAGAGCAATTATACTATTAGATATATCAGGAAATCATATTTCAAGCAATATTCCTACAACTATTGGTTCCTTAAAAACTTTGCAGAATCTCGCCTTAGCAGATAACAAATTGAATGGATCAATTCCCGCATCACTCGGTGGCATGGTGAGCTTGACCTCCTTGGACTTGTCGCAGAATATGTTAACCGGTGTTATTCCAAAATCTTTAGAATCGCTTTTGTATCTTCAAAGCATTAACTTCTCATATAATAGATTACAAGGTGAGATTCCTGATGGCGGACCTTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGCAATTCTCGCATGCATGTACCTCAATGTGTTAAACAAGTTAAGAAAACTTCAATGACAAAGAAGGTATTAATCAAATGCATAGTTCCCATAGTTGTGTCATCCATTTTGGTTGTTGCATTGATCATACTTCTAAAACAAAAGAAACGGAAAAGCAATGAAAGTAATCTTGAAAGGGGATTGTCAAGTTTCAGAGTTGCAAGAAGAATTTCATATTATGAACTTGTGCAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAGGGGTGGCTTTGGATCTGTGTATCAAGGAAAGCTTCCTGATGGTGAGATGGTTGCAGTTAAAGTAATTGATTTGCAATCAGAGGAAAAGTCAAGGAGCTTTGATGCAGAATGCAATGCAATGAGAAACCTACGACATCGAAATCTGGTTAAGATTATCAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTCAAATAACCATTGTTTAAATTTCTTGCAAAGATTAAATATAATGATAGATGTCGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCTGTGATTCACTGTGATCTAAAGCCTACAAATGTGTTGTTAGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCTAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAGACTTTGGCTACTATTGGATACCCTGCACCAGGTGGGCAACGGGGAGGACTCCCTTTTTTGGATGACCCTTGGCTGGAAGAAGGGGTGTCATTGCGGGATCGGTTTCATCGGTTAGCAGGTCTCTTTACGGATCAGGGAGTGCCAGTGGAGGAGATGTGTAGGAGAGGTTGGGATATGGGTGGCAGGGAGTGGAGTTGGAGGCGTCCTCTATTTGTGTGGGAAGAGGAATTGTTAGCAGGGTTTTGA 1656 0.3714 MSNLISFSLHENNINGPIPSAFKDLQKLEAFDLSNNGLKGSFIEELCEIESLVQLEIENNNLSGVLPTCLGNMTSLIYLYIGNNSLNSIPSSFWSLPDILEVDFSSNAFIGNLPLEIGNFRAIILLDISGNHISSNIPTTIGSLKTLQNLALADNKLNGSIPASLGGMVSLTSLDLSQNMLTGVIPKSLESLLYLQSINFSYNRLQGEIPDGGPFKNFTAQSFMHNEALCGNSRMHVPQCVKQVKKTSMTKKVLIKCIVPIVVSSILVVALIILLKQKKRKSNESNLERGLSSFRVARRISYYELVQATNGFSESNLLGRGGFGSVYQGKLPDGEMVAVKVIDLQSEEKSRSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNHCLNFLQRLNIMIDVASALEYLHHGSSIPVIHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYPAPGGQRGGLPFLDDPWLEEGVSLRDRFHRLAGLFTDQGVPVEEMCRRGWDMGGREWSWRRPLFVWEEELLAGF 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01182 551 ProSiteProfiles Protein kinase domain profile. 312 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01182 551 Pfam Protein kinase domain 313 480 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01182 551 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Tsu03g01182 551 SUPERFAMILY L domain-like 2 232 - -
Tsu03g01182 551 SMART LRR_typ_2 73 96 IPR003591 -
Tsu03g01182 551 SMART LRR_typ_2 49 72 IPR003591 -
Tsu03g01182 551 SMART LRR_typ_2 168 191 IPR003591 -
Tsu03g01182 551 Gene3D Transferase(Phosphotransferase) domain 1 388 492 - -
Tsu03g01182 551 Pfam Leucine rich repeat 126 181 IPR001611 GO:0005515
Tsu03g01182 551 Pfam Leucine rich repeat 51 108 IPR001611 GO:0005515
Tsu03g01182 551 Gene3D Phosphorylase Kinase; domain 1 293 387 - -
Tsu03g01182 551 SMART serkin_6 312 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01182 551 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Tsu03g01182 551 PANTHER RECEPTOR-LIKE PROTEIN 55 2 484 - -
Tsu03g01182 551 Gene3D Ribonuclease Inhibitor 1 248 IPR032675 -
Tsu03g01182 551 SUPERFAMILY Protein kinase-like (PK-like) 290 485 IPR011009 -
Tsu03g01182 551 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 2 484 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01182 Tsu-Chr3 11095187 11098503 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01182 3 505 Receptor kinase-like Gene Family AT3G47570 38.041 4.08e-105 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu03g01182 Pkinase 3e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01182 - K13420 mtr:MTR_0070s0020 754.207