Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01181 ATGAGCAACTTGATATCTTTTTCTCTAGATGGGAATAATATAAATGGACCAATACCTAGTACATTCAAAGATTTACAGAAACTTGAGGCATTTGACCTTAGCAACAATGGACTAAAAGGATCATTTATTGAGGAGCTTTGTGAAATCAAGAGTTTGGTTCAGTTGACAATAGAATATAATAAGATTTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTctcttatatatttatatataggatCTAACAGTTTGAGCTCTATACCTTCCTCTTTTTGGAGTCTCACAGATATCATAGAGGTAGATTTTTCCTCTAATGCTTTCATTGGTAATCTTCCACTTGAGATTGGAAATTTGAGGGCAATTGTACTATTAGATCTATCAGGAAATCATATTTCAAGCAATATTCCTACAACTATTGGTTCCTTAAAAACTTTGCAGGATCTCGCCTTAGCAGATAACAAATTGAATGGATCAATTCCCACGTCACTCGGTGACATGGTGAGCTTGATCTCCTTGGACTTGTCCCAGAATATGTTAACGGGTGTTATTCCAAAATCTTTAGAATCACTTTTGTATCTTCAAAGCGTTAACTTCTCATATAATAGATTACAAGGTGAGATTCCTGATGGCGGACCTTTCAAAAATTTCACAGCTCAATCATTTACGCATAATGAAGCACTTTGCGGCAATTCTCGCCTGCATGTACCTCAATGTGTTAAACAAGTTAAGAAAACTTCAATGGCGAAGAAGTTATTACTCAAATGCTTAGTTCCCATAGTTGTGTCAACCATTTTGGTTGTTGCATTGATCATACTtctaaaacaaaagaaaaggaaaagcaaTGAAAGTAATCTTGAAAGGGGATTGTCAAGTTTCGGAGTTGCAAGAAGAATTTCATATTATGAACTTGTGCAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAGGGGTGGCTTTGGCTCTGTGTATCAAGGAAAGCTTCCTGATGGTGAGATGGTTGCAGTTAAAGTAATTGATTTGCAATCAGAGGAAAAGTCAAGGAGCTTTGATGCAGAATGCAATGCAATGAGAAACCTACGACATCGAAATCTGGTTAAGATTATCAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTTGACAAATGGTTATATTCAAATAACCATTGTTTAAATTTCTTGCAAAGATTAAATATAATGATAGATGTCGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCTGTGATTCACTGTGATCTAAAGCCTACAAATGTGTTGTTAGATGAAAATATGGTTGCACATGTTAGCGATTTTGGTATTGCTAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAGACTTTGGCTACTATTGGATACCCTGCACCAGAATATGGATCTAAGGGAATTGTTTCTATCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATTTTCACAAGAAGAAAACCAACAGATGATATGTTTGTTGCAGAACTAAGTTTAAAAACATGGATCAGTGAATCAATGCCTAATTCAATTATGGAGGTCTTAGATTCtaatttattccaaaaaaatgGGGAACAAATCAATGACATATTGACTCACATGACATCTATTTTTGGTTTAGCCTTAAATTGTTGTGAATATTCCCCTGAAGCAAGAACTAATATGACAGATGTTACTGCGTCGCTAATCAAAATCAAGACTTTGGTTCTTGGCGCAAACGGGGTCTAG 1794 0.3462 MSNLISFSLDGNNINGPIPSTFKDLQKLEAFDLSNNGLKGSFIEELCEIKSLVQLTIEYNKISGVLPTCLGNMTSLIYLYIGSNSLSSIPSSFWSLTDIIEVDFSSNAFIGNLPLEIGNLRAIVLLDLSGNHISSNIPTTIGSLKTLQDLALADNKLNGSIPTSLGDMVSLISLDLSQNMLTGVIPKSLESLLYLQSVNFSYNRLQGEIPDGGPFKNFTAQSFTHNEALCGNSRLHVPQCVKQVKKTSMAKKLLLKCLVPIVVSTILVVALIILLKQKKRKSNESNLERGLSSFGVARRISYYELVQATNGFSESNLLGRGGFGSVYQGKLPDGEMVAVKVIDLQSEEKSRSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNHCLNFLQRLNIMIDVASALEYLHHGSSIPVIHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYPAPEYGSKGIVSIKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISESMPNSIMEVLDSNLFQKNGEQINDILTHMTSIFGLALNCCEYSPEARTNMTDVTASLIKIKTLVLGANGV 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01181 597 ProSiteProfiles Protein kinase domain profile. 312 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01181 597 Gene3D Phosphorylase Kinase; domain 1 295 387 - -
Tsu03g01181 597 SMART LRR_typ_2 73 96 IPR003591 -
Tsu03g01181 597 SMART LRR_typ_2 168 191 IPR003591 -
Tsu03g01181 597 SMART LRR_typ_2 49 72 IPR003591 -
Tsu03g01181 597 SMART LRR_typ_2 120 144 IPR003591 -
Tsu03g01181 597 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 2 589 - -
Tsu03g01181 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 431 443 IPR008271 GO:0004672|GO:0006468
Tsu03g01181 597 SUPERFAMILY L domain-like 2 232 - -
Tsu03g01181 597 Gene3D Ribonuclease Inhibitor 1 248 IPR032675 -
Tsu03g01181 597 SUPERFAMILY Protein kinase-like (PK-like) 291 584 IPR011009 -
Tsu03g01181 597 Gene3D Transferase(Phosphotransferase) domain 1 388 591 - -
Tsu03g01181 597 Pfam Leucine rich repeat 3 62 IPR001611 GO:0005515
Tsu03g01181 597 Pfam Leucine rich repeat 125 181 IPR001611 GO:0005515
Tsu03g01181 597 SMART serkin_6 312 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01181 597 Pfam Protein tyrosine and serine/threonine kinase 316 583 IPR001245 GO:0004672|GO:0006468
Tsu03g01181 597 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Tsu03g01181 597 PANTHER RECEPTOR-LIKE PROTEIN 55 2 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01181 Tsu-Chr3 11089167 11091193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01181 3 588 Receptor kinase-like Gene Family AT3G47570 37.459 2.94e-128 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu03g01181 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01181 - K13420 mtr:MTR_0070s0020 956.051