Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01178 ATGTTGTCTAATAATTGGTCAACTTCCACTTCTGCATGCAATTGGGTTGGTATCACTTGTGATGAACAACATGGTAGAGTCCACAGTTTGAATATCTCAAACATGGGTCTTAGAGATACTGGAACTAACAGCATGTCTGGACCCATACCTCAAACAATCTCCAATATGTCTTCACTTGAGGTTGTCTATTTATTTCATAATTACTTTTCAGGTTGGATACCTGATGAGATTGGCTATCTTGATAAACTTGTGTATTTCATATTGGCCAACAATAGCTTCACTGGATCTATTCCATCCAAACTCCTCAACATATCATCACTGAAATTCTTGGAGCTTGAACATAATTACCTCTCAGGCACAATTCCATCAAATACAGGATATAGCCTTCCTAGCCTGGAAAAAATACACTTTGATCATAACAATTTTGTTGGAAATATTCCAAAGAGTATATTCAACGCTTCCAAGctcattcaatttcaatttagtGTCAATGCATTCAGTGGAACACTACCCAACATTGCATTTGGTGATTTTAGGTTCCTCGAAGGGTTTTTAATagatgaaaacaatttgacaaTTGATGATTCCTTTCAATTATTTACCTCCTTGTCAAATTGTAGACATATGAAATTTATAGCACTATCAGGGAATCATATACAATCCAATCTTCCTAAATCAATTGGAAACATAACTACAGAATACTTTTGGGCAGATTCATGTGGAATTCATGGTAATATTCCCCTAGAAGTTGGAAATATAAGCAACTTGATATCTTTTTCTGtacaagaaaataatataaatggaCCAATAACTAGTACATTCAAAGATTTACAGAAACTTCAGGCGTTGGACCTTGGGTACAATGGACTAAAAGGATCATTTATTGAGGAGCTTTGTGAAATTGAGAGTTTGTTTGAGTTGTTCTTAGAACATAATAAGCTTTCTGGAGTTTTACCAACATGTTTGGGAAATATGACTTctcttatatatttatatataggatCCAACAGTTTCAACTCTATACCTTCCTCTTTTTGGAGTCTCACATATATCATACAGGTAGATTTTTCCTCTAATGCTTTCATTGGTAATCTTCCACTTGAGATTGGAAATTTGAGAGCAATTGTACTATTAGATCTATCAAGAAATCATTTTTCAAGCAACATTCCTACAACTATTAGTTCCTTAAAAACTTTGCAGAATCTCAACTTAACACATAATAAATTGAATGGATCAATTCCCGCATCACTCGGTGGCATGGTGAGCTTGACCTCCTTGGACTTGTCCCAGAATATGTTAACGGGTGTTATTCCAAAATCTTTAGAATCACTTTTGTATCTTCAAAGCGTTAACTTCTCATATAATAGATTACAAGGTGAGATTCCTGATGGCGGACCTTTCAAAAATTTCACAGCTCAATCATTTATGCATAATGAAGCACTTTGCGGCAATTCTCGCCTGCATGTACCTCAATGTGTTAAACAAGTTAAGAAAACTTCATTGGCAAAGAAGTTATTACTCAAATGCATAGTTCCCATAGTTGTGTCAACCATTTTGGTTGTTGCATTGATCATACTtctaaaacaaaagaaaagaaaaaggaatgaAAATAATCTTGAAAGGGGATTGTCAAGTTTCGAAGTTGCAAGAAGAATTTCATATTATGAACTTGTGCAAGCAACTAATGGATTCAGTGAGAGTAATTTACTTGGAAGGGGTGGCTTTGGATCTGTGTATCAAGGAAAGCTTCCTGGTGGTGAGATGGTTGCAGTTAAAGTAATTGATTTGCAATCAGAGGAAAAGTCAAGGAGCTTTGATGCAGAATGCAATGCAATGAGAAACCTACGACATCGAAATCTGGTTAAGATTATCAGTAGTTGCTCAAATCTTGATTTCAAATCATTGGTGATGGAGTTCATGTCAAATGGAAGTGTGGACAAATGGTTATATTCCAATAACCATTGTCTAAATTTCTTGCAAAGATTAAATATAATGATAGATGTTGCATCTGCATTGGAATATCTCCATCATGGTTCTTCAATACCTGTGATTCACTGTGATCTAAAGCCTACGAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCTAAGCTCATGGATGAAGGACAATCTAAAACTCATACACAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAAGGGAATTGTTTCTATCAAAGGAGATGTGTACAGCTATGGAATTATGCTAATGGAAATTTTCACAAGAAGAAAACCAACAGATGATATGTTTGTTGCAGAACTAAGTTTGAAAACATGGATCAGTAAATCAATGCCTAATTCAATTATGGAGGTCTTAGATTCTAATTTATTCCAAGAAAATGGGGAACAAATCAATGACATATTGACTCACATGTCATCTATTTTTGGTTTAGCCCTAAATTGTTGTGAATATTCACCTGAAGCAAGAATTAATATGACAGATGTTACTGCATCGCTAATCAAAATCAAGACTTTGGTTCATGGTGCAAACAGGGTCTAG 2550 0.3392 MLSNNWSTSTSACNWVGITCDEQHGRVHSLNISNMGLRDTGTNSMSGPIPQTISNMSSLEVVYLFHNYFSGWIPDEIGYLDKLVYFILANNSFTGSIPSKLLNISSLKFLELEHNYLSGTIPSNTGYSLPSLEKIHFDHNNFVGNIPKSIFNASKLIQFQFSVNAFSGTLPNIAFGDFRFLEGFLIDENNLTIDDSFQLFTSLSNCRHMKFIALSGNHIQSNLPKSIGNITTEYFWADSCGIHGNIPLEVGNISNLISFSVQENNINGPITSTFKDLQKLQALDLGYNGLKGSFIEELCEIESLFELFLEHNKLSGVLPTCLGNMTSLIYLYIGSNSFNSIPSSFWSLTYIIQVDFSSNAFIGNLPLEIGNLRAIVLLDLSRNHFSSNIPTTISSLKTLQNLNLTHNKLNGSIPASLGGMVSLTSLDLSQNMLTGVIPKSLESLLYLQSVNFSYNRLQGEIPDGGPFKNFTAQSFMHNEALCGNSRLHVPQCVKQVKKTSLAKKLLLKCIVPIVVSTILVVALIILLKQKKRKRNENNLERGLSSFEVARRISYYELVQATNGFSESNLLGRGGFGSVYQGKLPGGEMVAVKVIDLQSEEKSRSFDAECNAMRNLRHRNLVKIISSCSNLDFKSLVMEFMSNGSVDKWLYSNNHCLNFLQRLNIMIDVASALEYLHHGSSIPVIHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTQTLATIGYLAPEYGSKGIVSIKGDVYSYGIMLMEIFTRRKPTDDMFVAELSLKTWISKSMPNSIMEVLDSNLFQENGEQINDILTHMSSIFGLALNCCEYSPEARINMTDVTASLIKIKTLVHGANRV 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01178 849 SUPERFAMILY Protein kinase-like (PK-like) 543 836 IPR011009 -
Tsu03g01178 849 Gene3D Phosphorylase Kinase; domain 1 545 639 - -
Tsu03g01178 849 Gene3D Ribonuclease Inhibitor 42 232 IPR032675 -
Tsu03g01178 849 Gene3D Ribonuclease Inhibitor 233 494 IPR032675 -
Tsu03g01178 849 ProSitePatterns Serine/Threonine protein kinases active-site signature. 683 695 IPR008271 GO:0004672|GO:0006468
Tsu03g01178 849 ProSitePatterns Protein kinases ATP-binding region signature. 570 592 IPR017441 GO:0005524
Tsu03g01178 849 SUPERFAMILY L domain-like 238 484 - -
Tsu03g01178 849 Pfam Protein tyrosine and serine/threonine kinase 568 835 IPR001245 GO:0004672|GO:0006468
Tsu03g01178 849 Gene3D Transferase(Phosphotransferase) domain 1 640 846 - -
Tsu03g01178 849 SUPERFAMILY L domain-like 2 231 - -
Tsu03g01178 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 1 43 - -
Tsu03g01178 849 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE EFR ISOFORM X1 42 841 - -
Tsu03g01178 849 Gene3D Ribonuclease Inhibitor 1 41 IPR032675 -
Tsu03g01178 849 SMART serkin_6 564 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01178 849 ProSiteProfiles Protein kinase domain profile. 564 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g01178 849 SMART LRR_typ_2 129 153 IPR003591 -
Tsu03g01178 849 SMART LRR_typ_2 104 128 IPR003591 -
Tsu03g01178 849 SMART LRR_typ_2 325 348 IPR003591 -
Tsu03g01178 849 SMART LRR_typ_2 420 443 IPR003591 -
Tsu03g01178 849 SMART LRR_typ_2 372 396 IPR003591 -
Tsu03g01178 849 SMART LRR_typ_2 301 324 IPR003591 -
Tsu03g01178 849 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 43 - -
Tsu03g01178 849 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 42 841 - -
Tsu03g01178 849 Pfam Leucine rich repeat 255 314 IPR001611 GO:0005515
Tsu03g01178 849 Pfam Leucine rich repeat 377 433 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01178 Tsu-Chr3 11043392 11055678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01178 43 849 Receptor kinase-like Gene Family AT3G47570 35.876 4.05e-168 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Tsu03g01178 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01178 - K13420 mtr:MTR_8g465340 1179.47