Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01177 ATGAcaccctttaattttttctttctattatactTTCTATTGATTCCAACAAGTGGTTATTTCCAACCACTTGAAGATGATGGGTTCATCTCTGGTGTTATATCTAATAAGGGTCTTGATTTTGCTAAGGATTTGTTAATAGAGAAAGGTATTGATACTATTGTTCTTCTTAAGTTGCCTGAGATTGAGAATACTGCACAAGTTCCACTTGTTGGAAATGCTAAGGTTGTTCTTTCTGATAttataattaaggatgttcAAGTTAATTCTTCTTCTGTTATGATTGGAGAGAGTGGTATATTTATAGTTGTTTCAGGTGCTACTGTTGATTTGAGTATGAAGTGGAAGTATACTGTGAGTTCTTGGTTGATTCCAATTGGAATTTCTGATCATGGGACTGCTTCAATTAAGGTTGAAGGCATGCAAGTGGGACTTACATTAAATTTAAAGAACCAAGGAGGAGGTCTTAAGTTGAGTCTCTTAGATCATGGATGCTATGTTGGTGATTTATCTATTCAGTTAAACGGTGGGGCAGCTTGGCTTTACCAATTGCTAATTGATGCTTTTCAAGAGAATATAGCATCTTCAGTGGAAGAAGGCATTTcagataaaataaaagaaggaaTAGAAAAGCTTGATAATTCTTTGCAAACTCTTCCTAAGCAAATCGCACTAGACAAAACCGCTGCActaaatgtttcttttgttggCAATCCCGTGGTGACTAATTCctctcttgcaattgcaattaATGGTTTATTCACAAGGACGAGTGAAATTTTAGTACCTCAAAGTTACAAGAATGGATATAAGGTTTCTTCTGCCTGTGGTGGTTTACCAAAAATGATAAAGGTTTCGATACATGAAAATGTATTAAAATCTGCTTCTCTAGTTTACTTCAACGCAGgtaaaatgcaaataattatCGATGACCTACCCGATCAGAACCTTCTGAACACTGCTGAATGGAGATTTGTAGTTCCTCAATTATACAAGCGATATCCAAACGATGACATGCAGATTAATATCTCTGTATCTTCTCTACCAGTTATACAAGTGGGCTACCAAGATATTGGTGCTACTCTTTCTGTAGATATAACAATTGATGTTCTCGAAGGCGGCGAAGTCATTCCTGTTGCATGTATATCAGTGGATGTTAGTGCTTCATGTGGTGTGGAAATTTTAGGAAACAACATTGCTGGTAGACTTACATTACAAAATTTTTCTGCATACTTGAAATGGAGCAAAATAGGAAAACTGCACATACATCTTATTCAGTCACTGATATCAAGCATCCTCAAAACAGTTGTCCTACCATACTTGAACCTCCAATTAAAGAATGGATTCCCATTGCCAGCTATTGATGGTTATGGATTTCAGAATACTATTATCTTGTACAATTATCCATGGATTTCAGTGTGTAGTGATATTTCCTTTATAGAAGAAGACTACTATCTTATTCAACATTCAACTTATGCATCATAA 1485 0.332 MTPFNFFFLLYFLLIPTSGYFQPLEDDGFISGVISNKGLDFAKDLLIEKGIDTIVLLKLPEIENTAQVPLVGNAKVVLSDIIIKDVQVNSSSVMIGESGIFIVVSGATVDLSMKWKYTVSSWLIPIGISDHGTASIKVEGMQVGLTLNLKNQGGGLKLSLLDHGCYVGDLSIQLNGGAAWLYQLLIDAFQENIASSVEEGISDKIKEGIEKLDNSLQTLPKQIALDKTAALNVSFVGNPVVTNSSLAIAINGLFTRTSEILVPQSYKNGYKVSSACGGLPKMIKVSIHENVLKSASLVYFNAGKMQIIIDDLPDQNLLNTAEWRFVVPQLYKRYPNDDMQINISVSSLPVIQVGYQDIGATLSVDITIDVLEGGEVIPVACISVDVSASCGVEILGNNIAGRLTLQNFSAYLKWSKIGKLHIHLIQSLISSILKTVVLPYLNLQLKNGFPLPAIDGYGFQNTIILYNYPWISVCSDISFIEEDYYLIQHSTYAS 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01177 494 SMART bpi2_2 277 482 IPR001124 GO:0008289
Tsu03g01177 494 PANTHER LBP/BPI/CETP FAMILY, CARBOXY-TERMINAL DOMAIN PROTEIN 1 494 - -
Tsu03g01177 494 Pfam LBP / BPI / CETP family, N-terminal domain 38 212 IPR017942 GO:0008289
Tsu03g01177 494 PANTHER OS06G0309200 PROTEIN 1 494 IPR045897 -
Tsu03g01177 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 274 478 IPR017943 GO:0008289
Tsu03g01177 494 SMART bpi1_3 34 259 IPR017942 GO:0008289
Tsu03g01177 494 Pfam LBP / BPI / CETP family, C-terminal domain 281 462 IPR001124 GO:0008289
Tsu03g01177 494 Gene3D - 37 217 - -
Tsu03g01177 494 PIRSF Lipid_binding_protein 7 483 IPR030675 GO:0005615|GO:0008289
Tsu03g01177 494 SUPERFAMILY Bactericidal permeability-increasing protein, BPI 34 243 IPR017943 GO:0008289
Tsu03g01177 494 Gene3D - 33 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01177 Tsu-Chr3 11037451 11042413 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g01177 03 11037451 11042413 Tsu05g03914 05 50156663 50165906 PCT