LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g01176	atgactgAGAAACTTAATTTCTCCAAAATTAGCTTGCAAATGGCATCTTCTTCAGACTCATGGATGAAGGAATATAATGAAGCGATGAAACTTGCCGATGATATCACTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCAGGCTGGATAGCTTGCAATCCCTTTTGACAAAGGTCCCTGTAAAGTCTGACAAGGAGATGAATCGTCGCAAGGACAATCTTGGAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACGTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGTTTGGGCCCGAAATTAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAGTGGACTTGTTGGTCTGCAACGGCAAGTTATGAAAGCAGAGCAAGACGAGGGCCTTGAGAAATTGGAGGAAACAGTATTAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTTTCTCTACACACTAGACTCATTgaTGACTTGGATGAACATGTAGAGGTTACAGATTCTCGGCTAAGGAGAGTGCAGAAGAACTTAGCAGCTTTAAACAAACGTACCAAAGGTGGTTGCTCATGTTTGTGCATGCTATTATCAGTGATTGTTATTGCACAAACCATTGGCATCACAAATTTATCTTCCGATGTTGCCCTTGCTCTTGCACCCGATCTTGAATATCGTATTCGTGAAATTATGCAGGAATCGATTAAATGTATGCGTCATGGAAAGAGAACTTTTCTTACTGCTGATGATGTTGATGCTGCACTTGCATTGAGAAATTTAGAGCCGATATATGGTTTTGCCTCTAATGATCCTCCGCGGTTCAAAAGAGCTCCTGGGCACAAGGATTTGTTCTACATTGATGACAAGGATGTGGATATTAAAGATCTGGTTGAAGCTCCTTTACCAAAAGCACCCCTTGATACATCACTTACCAGTCATTGGTTGGCTATTGAAGGTGTGCAGCCTGCAATTCCTGAAAATGCTCCATTTGAAGCTTCATCTGAGATAAGAACAATTGAATATAAGGATGATGCGCTTCCTGTTGATGTCAAATTACCAGTTAAACATATAATAACGACGGAGCTTCAGCTTTActatgaaaaaataattgagCTGATTTTGAATAAGCCTGGCTCCATTCCTTTTAGAAGAGCATTGGTTACCTTAGCAACTGACTCAGGACTACATCCTTTAGTTCCTTATTTTTCACGCTTTGTTGCTGATGAGGTGGCACggaatttaaataatttaaatatttcatcTGCCTTGATGCGCCTTGTGCGGAGCCTTTTGCAAAATCCTCACATACATATAGAACTTTATTTACACCAATTGATGCCGCCTATCATTACTTGCATTGTTGCAAAAAGGATTGGAAACAGACTGTCTGATAATCACTGGGAGCTTAGGGACTTCAGTGCTAATCTCGTTGCTTTGATATGCAAAAGATTTGGGCATATGTATCACAATCTTCAGCCGCGTGTGACAAAGACATTTCTTCATTCTTTCTTGGATCCTACAAAAGCTTTACCTCAACACTATGGTGCAATTAAAGGAATAACAGCTCTTGGATCAAGACTGGTTCGCTTGCTTATACTTCCAAATCTTGAGCCATATATGCATCTTCTCGAGCCAGAAATGCAACTTGAGAagcaaaaaaatgaaataaaaaggCAAGAAGCATGGCGAGTCTACGGAGCCTTGCTGTGTGCAGTGGGCCAAAATATGCATGAAAAGGTCAAAAGATGCAGCAGTTTGGTTTCCCCTCCAACTCGTGCTACTTCAAGTGGTAATGGAAAAGCCATGAATGCAATGCCAGGTGTTACCGGGAATGTGGTACCAATGAATTCCATGTCAGTTGACAACATGCAAGGGTCAACAAGTGGATTTTCCCCCATGATGGGGGTTTCTAATTCAAATATGGGCATGTCATCATCAATGGGTCGTCAATTATCGAAAGAAAACAACAGTTCCTCTTCCATTCTAGCTCAAGCTTGGAAGGATGACATAGATGCAGGACAATTGCTGCCACCAGTGTTTGAATTATTTGGCGAGAGTTTGTTATCATTTATACCAAAACCTGAAgcatttCCACTCTATAATATCACATATGCATCTAATCTTTTCTTCCTTGACTTATCCTTCAACACTGGTGTTGGTCTTAAAACTCAATTGAATAATCTTCTTCGACTTTCTCCACTTTCTTCCTTGAAATATCTCAAACTTAGTGGAATTGATATTCACAAGGAAAACAACTGGCTTCAAGCAGTGGCTACACTTCCTTCACTATTAGAGTTACAAGCTCAGGAATTTCATTGGTAG	2403	0.3937	MTEKLNFSKISLQMASSSDSWMKEYNEAMKLADDITGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLTKVPVKSDKEMNRRKDNLGNLRSKVNQMASTLNMSNFANRDSLFGPEIKPDAMSRTVGLDNSGLVGLQRQVMKAEQDEGLEKLEETVLSTKHIALAVNEELSLHTRLIDDLDEHVEVTDSRLRRVQKNLAALNKRTKGGCSCLCMLLSVIVIAQTIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHGKRTFLTADDVDAALALRNLEPIYGFASNDPPRFKRAPGHKDLFYIDDKDVDIKDLVEAPLPKAPLDTSLTSHWLAIEGVQPAIPENAPFEASSEIRTIEYKDDALPVDVKLPVKHIITTELQLYYEKIIELILNKPGSIPFRRALVTLATDSGLHPLVPYFSRFVADEVARNLNNLNISSALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHNLQPRVTKTFLHSFLDPTKALPQHYGAIKGITALGSRLVRLLILPNLEPYMHLLEPEMQLEKQKNEIKRQEAWRVYGALLCAVGQNMHEKVKRCSSLVSPPTRATSSGNGKAMNAMPGVTGNVVPMNSMSVDNMQGSTSGFSPMMGVSNSNMGMSSSMGRQLSKENNSSSSILAQAWKDDIDAGQLLPPVFELFGESLLSFIPKPEAFPLYNITYASNLFFLDLSFNTGVGLKTQLNNLLRLSPLSSLKYLKLSGIDIHKENNWLQAVATLPSLLELQAQEFHW	800

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g01176	800	SMART	tSNARE_6	142	209	IPR000727	-
	Tsu03g01176	800	Pfam	TAF6 C-terminal HEAT repeat domain	476	563	IPR011442	GO:0006367
	Tsu03g01176	800	SUPERFAMILY	Histone-fold	225	282	IPR009072	GO:0046982
	Tsu03g01176	800	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	147	209	IPR000727	-
	Tsu03g01176	800	Gene3D	-	151	211	-	-
	Tsu03g01176	800	Pfam	SNARE domain	184	229	IPR000727	-
	Tsu03g01176	800	Pfam	TATA box binding protein associated factor (TAF)	225	282	IPR004823	-
	Tsu03g01176	800	Gene3D	Histone, subunit A	223	283	IPR009072	GO:0046982
	Tsu03g01176	800	Coils	Coil	192	212	-	-
	Tsu03g01176	800	Gene3D	-	381	586	IPR046344	GO:0006367
	Tsu03g01176	800	SMART	TAF_cls	222	285	IPR004823	-
	Tsu03g01176	800	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	226	632	-	-
	Tsu03g01176	800	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	665	723	-	-
	Tsu03g01176	800	CDD	SNARE_Qc	150	207	-	-
	Tsu03g01176	800	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	226	632	IPR037796	GO:0000124\|GO:0005669\|GO:0006367\|GO:0016251\|GO:0046695
	Tsu03g01176	800	PANTHER	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6	665	723	IPR037796	GO:0000124\|GO:0005669\|GO:0006367\|GO:0016251\|GO:0046695
	Tsu03g01176	800	CDD	TAF6C	382	598	IPR011442	GO:0006367
	Tsu03g01176	800	SUPERFAMILY	ARM repeat	411	603	IPR016024	-
	Tsu03g01176	800	SUPERFAMILY	SNARE fusion complex	144	207	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g01176	Tsu-Chr3	11024585	11037205	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g01176	4	230	SNARE and Associated Proteins	AT1G79590	70.563	5.00e-104	319

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g01176	K03131		-	gmx:100799998	738.028

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu03g01176	03	11024585	11037205	Tsu05g03916	05	50175785	50178555	PCT