Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g01161 ATGGCATCTTCGGATGACGAAGTTGATACACAGCCAATTTTCGTATCAAATTACCATTTCGTAGATGATAAAGATGCACCggtttctttttctgttttgccAATTCAATGGAGTGAGTCTGAGAGTCTTGAAGGGAAGAAAGAGAAGGTTTTCCTTCACGGTAACGCGGATAATGGGTTGCAGAAAGTTTTCATTCAAGTCAAAGCATGGAGGTTTGATCTTTCCAATGTCAAGCCGGAGATATCGGTGTTATCTAAGGATGGGAGATGGATTAAACTTCAAAAGCCAAGGAAGAGTTATGAAGATATCATAAGGACTGTTTTGATTACTGTTTATTTCATGCATTATGTGAAAAAGAATCCTGAAACATCGGCAAAATCTGTGTGGGATAGCTTGAGTAAGAATAAGGATTTTAGCTATTATGAAGTTAAACCTTCCCAAAATGATTTGTTAAACCACATGGCTTTAATGGGTGAAGCTGCCACAAGGGATGCTGTCTTAGCAAAGTCCAAGCTTTTGCTCACAGTTCTGGAAGATAAGGATAGGATGAGGATTAAGAAAATTCCTGACGAGGAAGTTAAAGAGCTAGCACGACCTGGATTTATAGTTGATGATACCTATGATGAAATTGATGAAACTGTTGCTGAGGAAGAGTCAGATGAAGAGGATGAGTTATTTGATTCTGTTTGTTCGTTTTGTGACAATGGTGGTGAACTTTTGtgTTGTGATGGGAAGTGCATGAGGTCATTTCATGCTAATAAGGAGGACGGTGAAGAGTCTTCTTGTGCCTCTCTTGGATTTAGCCGGAAGGAAGTTGAGGAGATCCAAAATTTCTATTGTAAGAATTGCAAATATAATAAACACCAGTGCTTTGCATGTGGCGAACTAGGCTGTTCGGATAAATTTGCTGGTGCTGAGGTCTTCAAATGTGCTTCTGCAACCTGCGGCTTCTTTTATCATCCACAATGTGTTACAAAGTTACTTCACCGAGTGGTTGAGGATGTTCAGCCGGAACTTGTAAGAAATATAGCTAGTGGGGAACCTTTCACTTGTCCTGCTCATTATTGCTGTATCTGCAAAGAAATGGAAAACAAGAAGGAGCACGATTTACACTTTGCTGTTTGTAGGCGTTGTCCCAAGTCATATCATCGCAAATGTTTGCCCAGAAAGATTGCTTTTGAAGACATAGAAGAAGAAGGGATTGTGCCCAGGGCTTGGGAAGGTCTTTTGCCAAACAATCGCATTCTTATTTATTGCCTAAAGCATGAGATAGATGATGAACTTGGAACTCCTATAAGAGATCATATAAAATTTCCCATTGTTAAAGAGAAGACAAAGCCTGCAACTAAAGAAGTTATAAACAAGAACAATGCCAAGTTAGATGATTTACCAGTCAAAAGACCCAGTGCTAAATTATCTAAAATGTCCGGTAAAATGTCCTCTGGGAAAGTTGGTTTTGAGAATCCtgaaaagatttctggatcaaaTATCCCTAGAAAGAAAGCAAATGAAGCATCAAGGAGGTATTTGAATGAAAATAAGAGGTCAACTTTAAAGGAAACCGAAAGGTCTGACTATGAGGGAAACCAGCCTTCACTGGGTGCGCAACTTTATTCTTTCTACCAGAAGGGTCCCAAGCAAATTAGTTCTGGCAATCATGTTGATAATGTATCTGATAACACCTTGTCTGTTAAGCGTACTAAAAAGCTGAGCAGTGCACCACCCCAATTAGATGCAGATTCAGAGAGGAGATTGTTGGCTTTGTTTAAAGAAGCTTCATCATCAATTACTATGGAGAAAGTCATAAAAGAACATAACTTTGCTTCTACTACTCACACACACTCACTGAAAAATGTCGTGGAGAAGACTATTACAGTGGGAAAGTTGGAAGGTTCAGTTGAGGCTGTTCGAACGGCTTTAAGGATGCTGGATGAAGGACATAGCATTCGGGATGCAGAAGCTGTTTGTGGTCCCGATGTAATGAACCGGATATTCAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTCTACATGGTAATCGCTACACATCATATGGTCGTCATTTTACACAAGTGGAAAAGCTGGAAGGGATTGTGGATAAACTCCATTGGTATGTTCAGAATGGTGATACGATTGTGGACTTCTGCTGTGGTGCTAATGATTTTAGCAGACTCATGAAGAAAAAGCTTGAAGAGACTGGGAAGAGATGCTCGTACAAAAACTTCGATTTACTTCCAACAAAGaatgattttaattttgagatGAGAGATTGGATGACTGTCCAGAAAAAGGAGTTGCCTCTAGGGTCACAGTTGATCATGGGCCTCAATCCCCCCTTTGGACTTAAAGCAGCTTTGGCTAACAAGTTTATAGACAAGGCTTTAGAGTTTGAGCCTAAGCTCATGATTCTTATAGTACCACCAGAGACACAGAGGCTGGATAGAAAACGGAAGCCATATGATCTTGTCTGGGAGGACGAGAGGTTTCTATCAGGCAAGTCGTTTTATCTACCTGGATCAGTTGATGCTAATGACAAGCAAATGGAGCAATGGAATGTAAAGCCACCCCCTCTCTACCTTTGGAGCCGTCCAGACTGGGCTGATAAGCATAAACTCATAGCCCAGGAGCATGGTCATCTGAGACAGCATGACCTATCAAGGATGGAAAGCTTCGATAAGGATAAATCCTCTGCCAGTCATACTATGGATGATGATTATGTTGATGATACCATGCTGGATCGTATGCTGGATCATGATTTCTTGAAGTCAACTAATGATGAAGATTGCTCATTTATGGTAGGACATAAGGAAGGCCTGTCCCATGGAAATGTTGATCGACAGGAGTATTTGGTGACTAAGGCTGAAAACACTTCATGGAAAAGGAAACCAATAGATGATGGAAGAGAACCAACTGTGACCTCGCATGCTAAAagacaaaatataaatgaaatgcATGAGGGAGTACTGGACCATGGTATCTCAAATCCACTTGATTTCGAAGGATATCAGTCTGAATCAGATATGATAATTTCAGATAATGAGGCTGGTGATAATGGTTATAAGCCTCTGGAGCCCCACTCTTCTGTCGGTGATGATGGCTATAGGCATCTTGAACCCCTCTCTTCCTCCCGGATGGAGTTTGGAGAAGCCTATGATGGGACTCAAAATTGGCCAAATGTTGCTGATCCCCTTCCTGATTACGGGTTGGCAGATTTACAAGATCACAATAGCAGGCATCTGGGAGACAGCACAAGTAGCCTTGGACATAGACCTGTTCTCAGGGAGGATGATAGTCCAATTCACCCTCCTGGAGTTCCGAATCCTGATCCTACGAGTAGTAGTTATCTATCTGGTCATGGTCCTGCTTATAACCAAATGGGATCTACTTATTCTGTACTTGGTTCTGGATCTGAACTGCCTtacatgatgaatataccagcTATGCAGACGAGTACACCAGCAATGCAACGATATGCACCTCGTCTCGATGAATTAAACCATGTTAGGACAAATTCTCTGGAGCCTGAACGTCCTATAATTGGTAGAAGTACCACTGCTGAACGTAGTACCCCCAAACCTGGATCTGGAAATGTGCCGCCTAGTTTTCCAGGTGGTCCTTCCCATTTGTATTCACGCCAGAATTCATCCAGTTGGTTTAGTGATTAA 3672 0.4052 MASSDDEVDTQPIFVSNYHFVDDKDAPVSFSVLPIQWSESESLEGKKEKVFLHGNADNGLQKVFIQVKAWRFDLSNVKPEISVLSKDGRWIKLQKPRKSYEDIIRTVLITVYFMHYVKKNPETSAKSVWDSLSKNKDFSYYEVKPSQNDLLNHMALMGEAATRDAVLAKSKLLLTVLEDKDRMRIKKIPDEEVKELARPGFIVDDTYDEIDETVAEEESDEEDELFDSVCSFCDNGGELLCCDGKCMRSFHANKEDGEESSCASLGFSRKEVEEIQNFYCKNCKYNKHQCFACGELGCSDKFAGAEVFKCASATCGFFYHPQCVTKLLHRVVEDVQPELVRNIASGEPFTCPAHYCCICKEMENKKEHDLHFAVCRRCPKSYHRKCLPRKIAFEDIEEEGIVPRAWEGLLPNNRILIYCLKHEIDDELGTPIRDHIKFPIVKEKTKPATKEVINKNNAKLDDLPVKRPSAKLSKMSGKMSSGKVGFENPEKISGSNIPRKKANEASRRYLNENKRSTLKETERSDYEGNQPSLGAQLYSFYQKGPKQISSGNHVDNVSDNTLSVKRTKKLSSAPPQLDADSERRLLALFKEASSSITMEKVIKEHNFASTTHTHSLKNVVEKTITVGKLEGSVEAVRTALRMLDEGHSIRDAEAVCGPDVMNRIFKWKDKLKVYLAPVLHGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSRLMKKKLEETGKRCSYKNFDLLPTKNDFNFEMRDWMTVQKKELPLGSQLIMGLNPPFGLKAALANKFIDKALEFEPKLMILIVPPETQRLDRKRKPYDLVWEDERFLSGKSFYLPGSVDANDKQMEQWNVKPPPLYLWSRPDWADKHKLIAQEHGHLRQHDLSRMESFDKDKSSASHTMDDDYVDDTMLDRMLDHDFLKSTNDEDCSFMVGHKEGLSHGNVDRQEYLVTKAENTSWKRKPIDDGREPTVTSHAKRQNINEMHEGVLDHGISNPLDFEGYQSESDMIISDNEAGDNGYKPLEPHSSVGDDGYRHLEPLSSSRMEFGEAYDGTQNWPNVADPLPDYGLADLQDHNSRHLGDSTSSLGHRPVLREDDSPIHPPGVPNPDPTSSSYLSGHGPAYNQMGSTYSVLGSGSELPYMMNIPAMQTSTPAMQRYAPRLDELNHVRTNSLEPERPIIGRSTTAERSTPKPGSGNVPPSFPGGPSHLYSRQNSSSWFSD 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g01161 1223 MobiDBLite consensus disorder prediction 1209 1223 - -
Tsu03g01161 1223 MobiDBLite consensus disorder prediction 1070 1122 - -
Tsu03g01161 1223 MobiDBLite consensus disorder prediction 501 526 - -
Tsu03g01161 1223 MobiDBLite consensus disorder prediction 469 530 - -
Tsu03g01161 1223 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1218 - -
Tsu03g01161 1223 SMART PHD_3 289 355 IPR001965 -
Tsu03g01161 1223 SMART PHD_3 229 284 IPR001965 -
Tsu03g01161 1223 SMART PHD_3 356 423 IPR001965 -
Tsu03g01161 1223 Pfam Cytosine specific DNA methyltransferase replication foci domain 15 133 IPR022702 -
Tsu03g01161 1223 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1218 - -
Tsu03g01161 1223 CDD PHD2_NSD 289 354 - -
Tsu03g01161 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 286 IPR013083 -
Tsu03g01161 1223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 401 IPR013083 -
Tsu03g01161 1223 MobiDBLite consensus disorder prediction 1169 1223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g01161 Tsu-Chr3 10884941 10899134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g01161 218 330 PHD Transcription Factor Family AT3G14980 30.973 2.81e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g01161 - - mtr:MTR_3g055370 2035.38